Publications

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In Press

Kadykalo, A.N., S.J. Cooke and N. Young. In Press. Conservation genomics from a practitioner lens: evaluating the research-implementation gap in a managed freshwater fishery. Biological Conservation. 00:000-000.

Comparative Biochemistry and Physiology Cover Image

McLean, M.F., M.K. Litvak, E.M. Stoddard, S.J. Cooke, D.A. Patterson, S.G. Hinch, D.W. Welch and G.T. Crossin.  In Press.  Linking environmental factors with reflex action mortality predictors, physiological stress, and post-release behaviour to evaluate the response of white sturgeon Acipenser transmontanusRichardson 1836 to catch-and-release angling.  Comparative Physiology and Biochemistry A.  00:000-000.

Journal of Environmental Management Cover Image

Young, N., S.J. Cooke, S.G. Hinch, C. DiGiovanni, M. Corriveau, S. Fortin, V.M. Nguyen and A.-M. Solås. In Press. “Consulted to death”: personal stress as a major barrier to environmental co-management. Journal of Environmental Management. 00:000-000.

Alexander, S.M., Provenchar, J., Henri, D., Taylor, J., Lloren, J.I., Nanayakkara, L., Johnson, J.T. and Cooke, S.J. In Press. Bridging Indigenous and science-based knowledge in coastal-marine research and management in Canada. Environmental Evidence. 00:000-000.

canadian journal of fisheries and aquatic sciences cover Image

Pérez-Jvostov, F., W.J. Sutherland, R.D.H. Barrett, C.A. Brown, J.A. Cardille, S.J. Cooke, M.E. Cristescu, N. Fortin St-Gelais G.F. Fussmann, K. Griffiths, A.P. Hendry, N.W.R. Lapointe, E.A. Nyboer R.L. Pentland, A.J. Reid, A. Ricciardi, J.M. Sunday and I. Gregory-Eaves. In Press. Horizon scan of conservation issues for inland waters in Canada. Canadian Journal of Fisheries and Aquatic Sciences. 00:000-000.

Fisheries Management and Ecology Cover Image

Filous A, Lennox RJ, Eveson P, Raveino R, Clua E, Cooke SJ, Danylchuk AJ. 2019. Population dynamics of roundjaw bonefish Albula glossodonta at a remote coralline Atoll inform community-based management in an artisanal fishery. Fisheries Management and Ecology 00:00-00.

Filous A, Lennox RJ, Clua EEG, Cooke SJ, Danylchuk AJ. 2019. Length-based assessment of an artisanal Albulid fishery in the South Pacific: A data-limited approach for management and conservation. Marine and Coastal Fisheries 00:000-000.

Sopinka, N.M., L.E. Coristine, M.C. De Rosa, C.M. Rochman, B.L. Owens and S.J. Cooke.  In Press.  Envisioning the scientific paper of the future.  FACETS.  00:000-000.

Cooke, S.J., J.R. Bennett and H.P. Jones.  In Press.  We have a long way to go if we want to realize the promise of the “Decade on Ecosystem Restoration”.  Conservation Science & Practice.  00:000-000.

Brownscombe JW, LP Griffin, JM Chapman, D Morley, A Acosta, GT Crossin, SJ Iverson, AJ Adams, SJ Cooke, AJ Danylchuk. In Press. A practical method to account for variation in detection range in acoustic telemetry arrays to accurately quantify the spatial ecology of aquatic animals. Methods in Ecology and Evolution. 00:000-000.

Hayden, T.A., Vandergoot, C., Fielder, D.G., Cooke, S.J., Dettmers, J.M., Krueger, C.C. In press. Telemetry reveals limited exchange of walleye between Lake Erie and Lake Huron: movement of two populations through the Huron-Erie corridor. Journal of Great Lakes Research.  00:000-000.

Reid, A. J., A. K. Carlson, D. E. L. Hanna, J. D. Olden, S. J. Ormerod, S. J. Cooke.  In Press.  Conservation challenges to freshwater ecosystems. Chapter X in S. A. Elias, editor. Encyclopedia of the World’s Biomes, Reference Module in Earth and Environmental Sciences. Elsevier.

canadian journal of fisheries and aquatic sciences cover Image

Pleizier, N.K., C. Nelson, S.J. Cooke and C.J. Brauner.  In Press.  Understanding gas bubble trauma in an era of hydropower expansion: How do fish compensate at depth?  Canadian Journal of Fisheries and Aquatic Sciences.  00:000-000.

Trends in EE

Flecker, A.S., C.W. Twining, O.J. Schmitz, S.J. Cooke and N. Hammerschlag. In Press. Aquatic predators influence micronutrients: Important but understudied. Trends in Ecology and Evolution. 00:000-000.

Gutowsky LFG, Romine JG, Heredia NA, Bigelow PE, Parsley MJ, Sandstrom PT, Suski CD, Danylchuk AJ, Cooke SJ, Gresswell RE. In Press. Revealing migration and reproductive habitat of invasive fish under an active population suppression program. Conservation Science and Practice. 00:000-000.

Environmental Reviews Cover Image

Jeanson,  A.L., P. Soroye, A.N. Kadykalo, T.D. Ward, E. Paquette, A.E.I. Abrams, D.A. Algera, D. Demers, L.J. Epp, M.P. Giles, M.A. Litt, B.A. Manouchehri, R.J. James, S. McBeth, A. Paradis, L. Pittet, J. Sebes, S.C. Steell, A. Thompson, P. Tremblay, E.I. Tuononen, J.T. Kerr, J.R. Bennett and S.J. Cooke.  In Press.  Twenty actions for a ‘Good Anthropocene’ – Perspectives from early career conservation professionals.  Environmental Reviews.  00:000-000.

Cooke, S.J., M.J. Lawrence, G.D. Raby, A.K. Teffer, K.M. Jeffries, A.J. Danylchuk and T.D. Clark.  In Press.  Comment on Duman et al. 2019 – Practices for drawing blood samples from Teleost fish. North American Journal of Aquaculture.  North American Journal of Aquaculture.  00:000-000.

Fisheries Cover Image

Reid, C.H., C.S. Vandergoot, J.D. Midwood, E.D. Stevens, J. Bowker and S.J. Cooke.  In Press.  On the electroimmobilization of fishes for research and practice: opportunities, challenges, and research needs.  Fisheries.  00:000-000.

French R.P., J.M. Lyle, W.M. Twardek, S.J. Cooke and J.M. Semmens.  In Press.  A characterization of Australian Shortfin Mako Shark anglers.  Marine Policy.  00:000-000.

canadian journal of fisheries and aquatic sciences cover Image

Lennox, R.J., J.M. Chapman, W.M. Twardek, F. Broell, K. Bøe, F.G. Whoriskey, I.A. Fleming, M. Robertson and S.J. Cooke.  In Press.  Biologging in combination with biotelemetry reveals behavior of Atlantic salmon following exposure to capture and handling stressors.  Canadian Journal of Fisheries and Aquatic Sciences.  00:000-000.

2019

Alexander, S.M., Provencher, J.F., Lloren, J.F., Henri, D.A., Nanayakkara, L., Taylor, J.J., Johnson, J.T., Cooke, S.J. 2019. Bridging Indigenous and science-based knowledge in coastal and marine research, monitoring, and management in Canada. Environmental Evidence. 8:36.

 

Bao, J., W. Li, C. Zhang, X. Mi, H. Li, X. Zhao, N. Cao, W.M. Twardek, S.J. Cooke and M. Duan.  2019.  Quantitative assessment of fish passage efficiency at a vertical-slot fishway on the Daduhe River in Southwest China.  Ecological Engineering. 141:105597.

Fish and Fisheries

Lynch, A.J., D.M. Bartley, T.D. Beard, Jr., I.G. Cowx, S. Funge-Smith, W.W. Taylor and S.J. Cooke. 2019. Examining progress toward achieving the Ten Steps of the Rome Declaration on Responsible Inland Fisheries. Fish and Fisheries. 00:1-14.

Environmental Management Cover Image

Parsapour-Moghaddam, P., C.P. Brennan, C.D. Rennie, C.K. Elvidge and S.J. Cooke. 2019. Impacts of channel morphodynamics on fish habitat utilization. Environmental Management. 64:272-286.

Lennox RJ, Paukert P, Aarestrup K, Auger-Méthé M, Baumgartner LJ, Birnie-Gauvin K, Bøe K, Brink K, Brownscombe JW, Chen Y, Davidsen JG, Eliason EJ, Filous A, Gillanders BM, Helland IP, Horodysky AZ, Januchowski-Hartley SR, Lowerre-Barbieri SK, Lucas MC, Martins ES, Murchie KJ, Pompeu P, Power M, Raghavan R, Rahel FJ, Secor DH, Thiem JD, Thorstad EB, Ueda H, Whoriskey FG, Cooke SJ. 2019. 100 pressing questions on the future of global fish migration science, conservation, and policy. Frontiers in Ecology and Evolution. 7:286. doi: 10.3389/fevo.2019.00286

Hydrobiologia Cover Image

Hansen, M.J., A.E. Steel, D.E. Cocherell, P.H. Patrick, M. Sills, S.J. Cooke, K.J. Carr, M.L. Kavvas and N.A. Fangue.  2019.  Experimental evaluation of the effect of a light emitting diode device on Chinook salmon smolt entrainment in a simulated river.  Hydrobiologia.  841:191-203.

Physiological and Biochemical Zoology

Teffer, A.K., Hinch, S.G., Miller, K.M., Jeffries, K.M., Patterson, D.A., Cooke, S.J., Farrell, A.P., Kaukinen, K.H., Li, S. and F. Juanes.  2019.  Cumulative effects of thermal and fisheries stressors reveal sex-specific effects on pathogen development and early mortality of adult coho salmon (Oncorhynchus kisutch). Physiological and Biochemical Zoology.  92(5):505-529.

Harcourt, R., A.M. Sequeira, X. Zhang, F. Roquet, K. Komatsu, M. Heupel, C.R. McMahon, F.G. Whoriskey, M. Meekan, G. Carroll, S. Brodie, C. Simpfendorfer, M.A. Hindell, I.D. Jonsen, D.P. Costa, B.A. Block, M.M. Muelbert, B.E. Woodward, M.J. Weises, K. Aarestrup, M. Biuw, L. Boehme, S.J. Bograd, D. Cazau, J-B. Charrassin, S.J. Cooke, P.D. Cowley, P.J.N. De Bruyn, T. Jeanniard Du Dot, C.M. Duarte, V.M. Eguíluz,   L. Ferreira, J. Fernández-Gracia, K. Goetz, Y. Goto, C. Guinet, M. Hammill, G.C. Hays, E. Hazen, L. Huckstadt, C. Huveneers, S. Iverson, S.A. Jaaman, K. Kittiwattanawong, K. Kovacs, C. Lydersen, T. Moltmann, M. Naruoka, B. Picard, N. Queiroz, G. Reverdin,   K. Sato, D.W. Sims, E.B. Thorstad, M. Thums, A.M. Treasure, A. Trites, G.D. Williams, Y. Yonehara and M. Fedak.  2019.  Animal-Borne Telemetry: an integral component of the ocean observing toolkit.  Frontiers in Marine Science.  6:326 doi: 10.3389/fmars.2019.00326.

Kelly, R., M. Mackay, K.L. Nash, C. Cvitanovic, E.H. Allison, D. Armitage, A. Bonn, S.J. Cooke, S. Frusher, E.A. Fulton, B.S. Halpern, P.F.M. Lopes, E.J. Milner-Gulland, M.A. Peck, G.T. Pecl, R.L. Stephenson and F. Werner.  2019.  Ten tips for developing the next generation of interdisciplinary socio-ecological researchers.  Socio-Ecological Practice Research. 1:149-161.

Reviews in Fish Biology and Fisheries Cover Image

Pinder, A.C., J.R. Britton, A.J. Harrison, P. Nautiyal, S.D. Bower, S.J Cooke, S. Lockett, M. Everard, U. Katwate, K. Ranjeet, S.Walton, A.J Danylchuk, N. Dahanukar, and R. Raghavan.  2019.  Mahseer (Tor spp.) fishes of the world: status, challenges and opportunities for conservation.  Reviews in Fish Biology and Fisheries.  29:417-452.

Twardek, W.M., Chapman, J.M., Miller, K.M., Beere, M.C., Li, S., Kaukinen, K.H., Danylchuk, A.J., Cooke, S.J. In Press.  Evidence of a hydraulically challenging reach serving as a barrier for the upstream migration of infection-burdened adult steelhead. Conservation Physiology. 7(1): coz023;doi:10.1093/conphys/coz023.

canadian journal of fisheries and aquatic sciences cover Image

Iverson, S.J., A.T. Fisk, S.G. Hinch, J. Mills Flemming, S.J. Cooke and F.G. Whoriskey.  2019.  The Ocean Tracking Network: Advancing frontiers in aquatic science and management.  Canadian Journal of Fisheries and Aquatic Sciences.  76:1041-1051.

Davidsen, J. G., Dong, H., Linné, M., Andersson, M. H., Piper, A., Prystay, T. S., Hvam, E. B., Thorstad, E. B., Whoriskey, F., Cooke, S. J., Sjursen, A. D., Rønning, L., Netland, T. C. & Hawkins, A. D. 2019. Effects of sound exposure from a seismic airgun on heart rate, acceleration and swimming depth in Atlantic cod and saithe. Conservation Physiology. 7(1): coz020; doi:10.1093/conphys/coz020.

Harrison, P.M., Keeler, R., Robichaud, D.,  Mossop, B., Power, M. & Cooke, S.J. 2019. Individual differences exceed species differences in the movements of a river fish community. Behavioural Ecology.  30(5):1289-1297.

Reviews in Fish Biology and Fisheries Cover Image

Brownscombe JW, E Ledee, GD Raby, DP Struthers, LFG Gutowsky, VM Nguyen, N Young, MJW Stokesbury, CM Holbrook, TO Brenden, CS Vandergoot, KJ Murchie, K Whoriskey, J Mills-Flemming, S. Kessel, CC Krueger, and SJ Cooke.  2019.  Conducting and interpreting fish telemetry studies: Considerations for researchers and resource managers. Reviews in Fish Biology and Fisheries 29:369-400.

 

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Brooks, J.L., J.M. Chapman, A.N. Barkley, S.T. Kessel, N.E. Hussey, S.G. Hinch, D.A. Patterson, K.J. Hedges, S.J. Cooke, A.T. Fisk, S.H. Gruber and V.M. Nguyen. 2019.  Biotelemetry informing management: case studies exploring successful integration of biotelemetry data into fisheries and habitat management.  Canadian Journal of Fisheries and Aquatic Sciences.  76: 1238-1252.

north american journal of fisheries management cover image

Walton-Rabideau, S.E., M. Newell, A.L. Jeanson, E.J.I. Lédée, J.M. Farrell, and S.J. Cooke. 2019.  Evaluation of tag retention, healing, growth and behavior in age-0 Muskellunge Esox masquinongy following acoustic transmitter implantation.  North American Journal of Fisheries Management.  39:652-663.

Alexander, S.M., Provencher, J., Henri, D., Taylor, J.J., & Cooke, S.J.  2019. Bridging Indigenous and science-based knowledge in coastal-marine research, monitoring, and management in Canada: A systematic map protocol. Environmental Evidence.  8:15.

Lawrence, M.J., Godin, J.-G.J., Zolderdo, A.J., & Cooke, S.J. 2019. Chronic plasma cortisol elevation does not promote riskier behaviour in a teleost fish: A test of the behavioural resiliency hypothesis. Integrative Organismal Biology, 1-18.

Journal of Experimental Zoology Cover Image

Lawrence, M.J., A.J. Zolderdo, J-G.J. Godin, J.W. Mandelman, K.M. Gilmour and S.J. Cooke.  2019.  Cortisol does not increase risk of mortality to predation in juvenile bluegill sunfish: a manipulative experimental field study.  Journal of Experimental Zoology Part A.  331:253-261.

Endangered Species Research Cover Image

Lennox RJ, Filous A, Cooke SJ, Danylchuk AJ. 2019. Substantial impacts of subsistence fishing on the population status of an Endangered reef predator at a remote coral atoll. Endangered Species Research. 38:135-145.

aquatic conservation cover image

Phang, S.C., M. Cooperman, A.J. Lynch, E.A. Steel, V. Elliott, K.J. Murchie, S.J. Cooke, S. Dowd and I. Cowx.  2019.  Fishing for conservation of freshwater tropical fishes in the Anthropocene.  Aquatic Conservation.  1-13.

environmental biology of fishes cover image

Adams, A.J., J.S. Rehage and S.J. Cooke.  2019.  A multi-methods approach supports the effective management and conservation of coastal marine recreational flats fisheries.  Environmental Biology of Fishes.  102:105-115.

French RP, Lyle JM, Lennox RJ, Cooke SJ, Semmens J. 2019. Motivation and harvesting behaviour of fishers in a specialized fishery targeting a top predator species at risk. People and Nature. 1:44-58.

Taylor, J.J. , Rytwinski, T., Bennett, J.R., Smokorowski, K.E., Lapointe, N.W.R., Janusz, R., Clarke, K., Tonn, B.,  Walsh, J.C., Cooke, S.J. 2019. The effectiveness of spawning habitat creation or enhancement for substrate-spawning temperate fish: a systematic review. Environmental Evidence. 8:19.

Cooke, S.J. 2019.  From frustration to fruition in applied conservation research and practice: ten revelations. Socio-Ecological Practice Research. 1:15-23.

Fisheries Cover Image

Cooke, S.J., A.J. Lynch, S. Vatland, D.A. Reich and J.E. Claussen. 2019. On the state of fish, fisheries, and fisheries management practices around the globe: Sharing national perspectives to build understanding. Fisheries. 44(2):53-55.

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Lennox, R.J., C. Engler-Palma, K. Kowarski, A. Filous, R. Whitlock, S.J. Cooke and M. Auger-Méthé.  2019.  Optimizing marine spatial plans with animal tracking data.  Canadian Journal of Fisheries and Aquatic Sciences.  76:497-509.

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Nguyen, V.M., N. Young, M. Corriveau, S.G. Hinch and S.J. Cooke. 2019.  What is ‘usable’ knowledge? Perceived barriers for integrating new knowledge into management of an iconic Canadian fishery.  Canadian Journal of Fisheries and Aquatic Sciences.  76:463-474.

Brownscombe, J.W., A.J. Adams, N. Young, L.P. Griffin, P. Holder, J. Hunt, A. Acosta, D. Morley, R. Boucek, S.J. Cooke and A.J. Danylchuk. 2019. Bridging the knowledge-action gap: A case of research rapidly impacting recreational fisheries policy. Marine Policy. 104:210-215.

Arlinghaus, R., J.K. Abbott, E.P. Fenichel, S.R. Carpenter, L.M. Hunt, J. Alós, T. Klefoth, S.J. Cooke, R. Hilborn, O.P. Jensen, M.J. Wilberg, J.R. Post, and M.J. Manfredo.  In Press.  Governing the recreational dimension of global fisheries. Proceedings of the National Academy of Sciences. 116(12):5209-5213.

Trends in EE

Hammerschlag N, Schmitz OJ, Flecker AJ, Lafferty KD, Sih A, Atwood T, Gallagher AJ, Irschick DJ, Skubel R, Cooke SJ. 2019. Ecosystem Function and Services of Aquatic Predators in the Anthropocene. Trends in Ecology & Evolution; 34(4): 369-383.

Haddaway, N.R., S.J. Cooke, P. Lesser, B. Macura, A.E. Nilsson, J.J. Taylor and K. Raito.  2019.  Evidence of the impacts of metal mining and the effectiveness of mining mitigation measures on social–ecological systems in Arctic and boreal regions: a systematic map protocol.  Environmental Evidence.  8:9.

Birnie-Gauvin, K., H. Flávio, M.L. Kristensen, S. Walton Rabideau, S.J. Cooke, W.G. Willmore, A. Koed and K. Aarestrup. 2019. Cortisol predicts migration timing and success in both Atlantic salmon and sea trout kelts.  Scientific Reports.  9:2422.

Zhang, X., H.Y. Li, Z.D. Deng, L.R. Leung, J.R. Skalski, S.J. Cooke. 2019. On the variable effects of climate change on Pacific salmon. Ecological Modelling 397:95-106.

Fisheries Research Cover Image

McLean, M. F., Litvak, M. K., Cooke, S. J., Hanson, K. C., Patterson, D. A., Hinch, S. G., & Crossin, G. T. 2019. Immediate physiological and behavioural response from catch-and-release of wild white sturgeon (Acipenser transmontanus Richardson, 1836). Fisheries Research. 214:65-75.

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Murchie, K.J., C.R. Haak, M. Power, O.N. Shipley, A.J. Danylchuk and S.J. Cooke.  2019. Ontogenetic patterns in resource use dynamics of bonefish (Albula vulpes) in The Bahamas.  Environmental Biology of Fishes.  102:117-127.

Halsey LG, Green JA, Twiss SD, Arnold W, Butler PJ, Cooke SJ, Grémillet D, Ruf T, Hicks O, Minta KJ, Prystay TS, Wascher CAF & V Careau. 2019. Flexibility, variability and constraint in energy management patterns across vertebrate taxa revealed by long-term heart rate measurements. Functional Ecology. 33:260-272.

Brownscombe, J.W., L. Griffin, T. Gagne, C.R. Haak, S.J. Cooke, J. Finn and A.J. Danylchuk.  2019.  Environmental drivers of habitat use by a marine fish on a heterogeneous and dynamic reef flat.  Marine Biology.  166:18.

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Brownscombe JW, AJ Danylchuk, AJ Adams, B Black, R Boucek, M Power, JS Rehage, RO Santos, RW Fisher, B Horn, CR Haak, S Morton, J Hunt, R Ahrens, MS Allen, J Shenker, SJ Cooke. 2019. Bonefish in South Florida: status, threats and research needs. Environmental Biology of Fishes. 102:329-348.

Bower, S.D., Song, A.M., Onyango, P., Cooke, S.J., Kolding, J. 2019. Using transdisciplinary research to support governance in inland fisheries. MARE Publication Series, Vol. 21, Chuenpagdee, R and Jentoft, S. (Eds): Transdisciplinarity for Small-Scale Fisheries Governance, 978-3-319-94937-6, 466764_1_En.

Comparative Biochemistry and Physiology Cover Image

Cook, K.V., S.G. Hinch, S.M. Drenner, G.D. Raby, D.A. Patterson and S.J. Cooke.  2019.  Dermal injuries caused by a purse seine capture result in lasting physiological disturbances in coho salmon. Comparative Biochemistry and Physiology A 227:75-83.

Fisheries Research Cover Image

Bower, S.D., N. Mahesh, R. Raghavan, A.J. Danylchuk and S.J. Cooke.  2019.  Sub-lethal responses of mahseer (Tor khudree) to catch-and-release recreational angling.  Fisheries Research.  211:231-237.

2018

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Twardek, W.M., L.K. Elmer, M.C. Beere, S.J. Cooke and A.J. Danylchuk.  2018.  Consequences of fishery gear type and handling practices on capture and release of wild Steelhead on the Bulkley River.  Fisheries Research.  206:235-246.

Journal of Fish Biology Cover Image

Raby, G.D., J. Sundin, F. Jutfelt, S.J. Cooke and T.D. Clark.  2018.  Exposure to elevated carbon dioxide does not impair short-term swimming behaviour or shelter-seeking in a predatory coral reef fish. Journal of Fish Biology. 93:138-142.

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Bass, A.L., S.G. Hinch, D.A. Patterson, S.J. Cooke and A.P. Farrell.  2018.  Location-specific consequences of beach seine and gillnet capture on upriver-migrating sockeye salmon migration behavior and fate.  Canadian Journal of Fisheries and Aquatic Sciences.  75:2011-2023.

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Drenner, S.M., S. G. Hinch, N. B. Furey, T. D. Clark, S. Li, T. Ming, K. M. Jeffries, D. A. Patterson, S. J. Cooke, D. Robichaud, D. W. Welch, A P. Farrell, and K.M. Miller. 2018.  Transcriptome patterns and blood physiology associated with homing success of sockeye salmon during their final stage of marine migration. Canadian Journal of Fisheries and Aquatic Sciences.  75:1511-1524.

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Nguyen, V.M., N. Young and S.J. Cooke.  2018.  Applying a knowledge-action framework for navigating barriers to incorporating telemetry science into fisheries management and conservation: a qualitative study.  Canadian Journal of Fisheries and Aquatic Sciences.  75:1733-1743.

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Madenjian, C.P., T.A. Hayden, T.B. Peat, C.S. Vandergoot, D.G. Fielder, A-M. Gorman, S.A. Pothoven, J.M. Dettmers, S.J. Cooke, Y. Zhao and C.C. Krueger.  2018.  Temperature regimes, growth, and food consumption for female and male adult walleye in Lake Huron and Lake Erie: a bioenergetics analysis.  Canadian Journal of Fisheries and Aquatic Sciences.  75:1573-1586.

Reid, A.J., A.K. Carlson, I.F. Creed, E.J. Eliason, P.A. Gell, P.T.J. Johnson, K.A. Kidd, T.J. MacCormack, J.D. Olden, S.J. Ormerod, J.P. Smol, W.W. Taylor, K. Tockner, J.C. Vermaire, D. Dudgeon and S.J. Cooke.  2018.  Emerging threats and persistent conservation challenges for freshwater biodiversity.  Biological Reviews.  DOI 10.1111/brv.12480.

Hlevca, B., Wells, M.G., Cruz Font, L., Cooke, S.J., Doka, S.E., Portiss, R., St. John, M. 2018. Water circulation in Toronto Harbour. Aquatic Ecosystem Health and Management.  21(3):234-244.

north american journal of fisheries management cover image

Struthers, D.P., Bower, S.D., Lennox, R.J., Gilroy, C., MacDonald, B., Cooke, S.J., and Litvak,   M.K. 2018. Short-term physiological disruption and reflex impairment in Shortnose Sturgeon Acipenser brevirostrum exposed to catch-and-release angling. North American Journal of Fisheries Management. 38:1075-1084.

Journal of Fish Biology Cover Image

Raby, G.D., J. Sundin, F. Jutfelt, S.J. Cooke and T.D. Clark.  2018.  Exposure to elevated carbon dioxide does not impair short-term swimming behaviour or shelter-seeking in a predatory coral reef fish.  Journal of Fish Biology.  93:138-142.

River Research and Applications Image

Lennox RJ, Thorstad EB, Diserud OH, Økland F, Cooke SJ, Aasestad I, Forseth T. 2018. Biotic and abiotic determinants of the ascent behaviour of adult Atlantic salmon transiting passable waterfalls. River Research and Applications 34:907-917.

Lennox RJ, Eliason EJ, Havn TB, Johansen MR, Thorstad EB, Cooke SJ, Diserud OH, Whoriskey FG, Farrell AP, and Uglem I. 2018. Bioenergetic consequences of warming rivers to adult Atlantic salmon during their spawning migration. Freshwater Biology 63: 1381-1393.

Lennox RJ, Økland F, Mitamura H, Cooke SJ, Thorstad EB. 2018. European eel Anguilla anguilla compromise speed for safety in the early marine spawning migration. ICES Journal of Marine Science 75(6):1984-1991.

Bouyoucos IA, Talwar BS, Brooks EJ, Brownscombe JW, Cooke SJ, Suski, CD, Mandelman J. 2018. Exercise intensity while hooked is associated with physiological status of longline-captured sharks. Conservation Physiology. 6: doi: 10.1093/conphys/coy074.

Lapointe D, Cooperman MS, Chapman LJ, Clark TD, Val AL, Ferreira MS, Balirwa J, Mbabazi D, Mwanja M, Chhom L, Hannah L, Kaufman L, Farrell AP, Cooke SJ. 2018. Predicted impacts of climate warming on aerobic performance and upper thermal tolerance of six tropical freshwater fishes spanning three continents. Conservation Physiology 6: doi: 10.1093/conphys/coy056.

Hansen, M.J., D.E. Cocherell, S.J. Cooke, P.H. Patrick, M. Sills and N.A. Fangue.  2018.  Behavioural guidance of Chinook salmon smolts: the variable effects of LED spectral wavelength and strobing frequency.  Conservation Physiology.  6: doi: 10.1093/conphys/coy032.

Costa, M.J., I. Boavida, V. Almeida, S. J. Cooke, M.T. Ferreira and A. Pinheiro.  2018.  Do artificial velocity refuges mitigate the physiological and behavioural consequences of hydropeaking on a freshwater Iberian cyprinid?  Ecohydrology.  11:e1983.

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Jain-Schlaepfer, S.M.R., J.D. Midwood, M.H. Larsen, K. Aarestrup, G.D. King, C.D. Suski and S.J. Cooke.  2018.  Relationship of baseline and maximum glucocorticoid concentrations to migration propensity – a field test with wild sub-adult brown trout (Salmo trutta).  Canadian Journal of Zoology.  96:1346-1352.

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Guckian, M.L., A.J. Danylchuk, S.J. Cooke and E.M. Markowitz.  2018.  Peer pressure on the riverbank: Assessing catch-and-release anglers’ willingness to sanction others’ (bad) behavior.  Journal of Environmental Management. 219:252-259.

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Brownscombe⁠, J.W., K. Hyder, W. Potts, K. Wilson, K.L. Pope, A.J. Danylchuk, S.J. Cooke, A. Clarke, R. Arlinghaus and J.R. Post.  2018.  The future of recreational fisheries: Advances in science, monitoring, management, and practice.  Fisheries Research.  211:247-255.

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Krueger, C.C., C.M. Holbrook, T.R. Binder, C.S. Vandergoot, T.A. Hayden, D.W. Hondorp, N. Nate, K. Paige, S.C. Riley, A.T. Fisk and S.J. Cooke.  2018.  Acoustic Telemetry Observation Systems: challenges encountered and overcome in the Laurentian Great Lakes.  Canadian Journal of Fisheries and Aquatic Sciences.  75:1755-1763.

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Shipley, O.N., J.W. Brownscombe, A.J. Danylchuk, S.J. Cooke, O.R. O’Shea and E.J. Brooks.  2018.  Fine-scale movement and activity patterns of Caribbean reef sharks (Carcharhinus perezi) in The Bahamas.  Environmental Biology of Fishes.  101:1097-1104.

Hollins, J., D. Thambithurai, B. Köeck, A. Crespel, D.M. Bailey, S.J. Cooke, J. Lindström, K.J. Parsons and S.S. Killen.  2018.  A physiological perspective on fisheries-induced evolution.  Evolutionary Applications.  11:561-576.

Jerome, J.M., A.J. Gallagher, S.J. Cooke and N. Hammerschlag.  2018.  Integrating reflexes with physiological measures to evaluate coastal shark stress response to capture.  ICES Journal of Marine Science.  75(2):796-804.

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Danylchuk, A.J., S.C. Danylchuk, A. Kosiarski, S.J. Cooke and B. Huskey.  2018.  Keepemwet Fishing – An emerging social brand for disseminating best practices for catch-and-release in recreational fisheries.  Fisheries Research.  205:52-56.

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Lawrence, M.J., Godin, J.G.J, and Cooke, S.J. 2018. Does experimental cortisol elevation mediate risk-taking and antipredator behaviour in a wild teleost fish? Comparative Biochemistry and Physiology: part A. 226: 75-82.

Browman, H.I., S.J. Cooke, I.G. Cowx, S.W.G. Derbyshire, A. Kasumyan, B. Key, J.D. Rose, A. Schwab, A. Berit Skiftesvik, E.D. Stevens, C.A. Watson and R. Arlinghaus.  2018.  Welfare of aquatic animals: Where things are, where they are going, and what it means for research, aquaculture, recreational angling, and commercial fishing.  ICES Journal of Marine Science.  DOI 10.1093/icesjms/fsyo67.

Eales, J., N.R. Haddaway, C. Bernes, S.J. Cooke, B. Gunnar Jonsson, J. Kouki, G. Petrokofsky and J.J. Taylor.  2018.  What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond tree regeneration, pyrophilous and saproxylic species? A systematic review.  Environmental Evidence.  7:19. DOI 10.1186/s13750-018-0131-5.

Funge-Smith, S., D. Beard, S. Cooke and I. Cowx.  2018.  Recreational fisheries in inland waters.  Pages 272-283 in S.J. Funge-Smith, Editor.  Review of the state of world fishery resources: inland fisheries.  FAO Fisheries and Aquaculture Circular No. C942 Rev.3, Rome. 397 pp.

Physiological and Biochemical Zoology

Silva, A.T., J.D. Midwood, K. Aarestrup, T.G. Pottinger, S.S. Madsen and S.J. Cooke.  2018.  The influence of sex, parasitism, and ontogeny on the physiology response of European eel (Anguilla anguilla) to an abiotic stressor.  Physiological and Biochemical Zoology.  91(4):980-986.

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Twardek, W.M., T.O. Gagne, L.K. Elmer, S.J. Cooke, M.C. Beere and A.J. Danylchuk. 2018. Consequences of catch-and-release angling on the physiology, behaviour and survival of wild steelhead in the Bulkley River, British Columbia. Fisheries Research. 206: 235-246.

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Cook, K. V., Hinch, S. G., Watson, M. S., Patterson, D. A., Reid, A. J., & Cooke, S. J. 2018. Experimental capture and handling of chum salmon reveal thresholds in injury, impairment, and physiology: Best practices to improve bycatch survival in a purse seine fishery. Fisheries Research. 206: 96-108.

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Raby, G.D., V. Messmer, A.J. Tobin, A.S. Hoey, F. Jutfelt, J. Sundin, S.J. Cooke and T.D. Clark.  2018.  Swim for it: effects of simulated fisheries capture on the post-release behaviour of four Great Barrier Reef fishes. Fisheries Research. 206:129-137.

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Griffin, L.P., J.W. Brownscombe, A.J. Adams, R.E. Boucek, J.T. Finn, M.R. Heithaus, J.S. Rehage, S.J. Cooke and A.J. Danylchuk.  2018.  Keeping up with the Silver King: Using cooperative acoustic telemetry networks to quantify the movements of Atlantic tarpon (Megalops atlanticus) in the coastal waters of the southeastern United States.  Fisheries Research. 205:65-76.

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Loury, E., S.M. Ainsley, S. Bower, R. Chuenpagdee, T. Farrell, A.G. Guthrie, S. Heng, Z. Lunn, A. Al Mamun, R. Oyanedel, S. Rocliffe, S. Satumanatpan and S.J. Cooke.  2018.  Salty stories, fresh spaces: Lessons for aquatic protected areas from marine and freshwater experiences.  Aquatic Conservation.  28:485500.

Transactions of the American Fisheries Society

Dick, M., E.J. Eliason, D.A. Patterson, K.A. Robinson, S.J. Cooke, S.G. Hinch. 2018. Short-term physiological response profiles of tagged migrating adult sockeye salmon: a comparison of gastric and external tagging methods. Transactions of the American Fisheries Society. 147:300-315.

Hydrobiologia Cover Image

Stoot, L.J., D.P. Gibson, S.J. Cooke and M. Power.  2018.  Assessing the potential for using low frequency electric deterrent barriers to reduce lake sturgeon (Acipenser fluvescens) entrainment.  Hydrobiologia.  813:223-235.

Tomlinson, S., J.L. Rummer, K.R. Hultine and S.J. Cooke.  2018.  Crossing boundaries in conservation physiology.  Conservation Physiology (Editorial).  6:1-5.

Raymond, C.V., L. Wen, S.J. Cooke and J.R. Bennett.  2018.  National attention to endangered wildlife is not affected by global endangerment: A case study of Canada’s species at risk program.  Environmental Science and Policy.  84:74-79.

Endangered Species Research Cover Image

Elvidge, C.K., M.I. Ford, T.C. Pratt, K.E. Smokorowski, M. Sills, P.H. Patrick and S.J. Cooke.  2018.  Behavioural guidance of yellow-stage American eel Anguillla rostrata with a light-emitting diode (LED) device.  Endangered Species Research. 35:159-168.

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Ford, M.I., C.K. Elvidge, D. Baker, T.C.  Pratt, K.E. Smokorowski, M. Sills, P. Patrick and S.J. Cooke.  2018.  Preferences of age-0 white sturgeon for different colours and strobe rates of LED lights may inform behavioural guidance strategies.  Environmental Biology of Fishes.  101:667-674.

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Raby, G.D., C.S. Vandergoot, T.A. Hayden, M.D. Faust, R.T. Kraus, J.M. Dettmers, S.J. Cooke, Y. Zhao, A.T. Fisk and C.C. Krueger.  2018.  Does behavioural thermoregulation underlie seasonal movements in Lake Erie walleye?  Canadian Journal of Fisheries and Aquatic Sciences.  75:488-496.

Journal of Fish Biology Cover Image

Birnie-Gauvin, K., K.S. Peiman, M.H. Larsen, K. Aarestrup, K.M. Gilmour and S.J. Cooke.  2018.  Comparison of vegetable shortening and cocoa butter as vehicles for cortisol manipulation in fish from north temperate regions.  Journal of Fish Biology.  92(1):229-236.

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Young, N., M. Corriveau, V.M. Nguyen, S.J. Cooke and S.G. Hinch.  2018.  Embracing disruptive new science? Biotelemetry meets co-management in Canada’s Fraser River.  Fisheries.  43(1):51-60.

Fish and Fisheries

Silva, A.T., M.C. Lucas, T. Castro-Santos, C. Katopodis, L.J. Baumgartner, J.D. Thiem, K. Aarestrup, P.S. Pompeu, G.C. O’Brien, D. Braun, N.J. Burnett, D.Z. Zhu, H-P. Fjeldstad, T. Forseth, N. Rajaratnam, J.G. Williams and S.J. Cooke.  2018.  The future of fish passage science, engineering, and practice.  Fish and Fisheries.  19(2):340-362.

Birnie-Gauvin, K., M.H. Larsen, K. Aarestrup, W.G. Willmore and S.J. Cooke. 2018. N-acetylcysteine manipulation fails to elicit an increase in glutathione in a teleost model. Fish Physiology and Biochemistry.  44(1):137-142.

Cook, K.V., S.G. Hinch, S.M. Drenner, E.A. Halfyard, G.D. Raby and S.J. Cooke.  2018.  Population-specific mortality in coho salmon (Oncorhynchus kisutch) released from a purse seine fishery.  ICES Journal of Marine Science. 75(1):309-318.

Ecology of Freshwater Fish Cover Image

Hayden, T.A., T.R. Binder, C.M. Holbrook, C.S. Vandergoot, D.G. Fielder, S.J. Cooke, J.M. Dettmers and C.C. Krueger.  2018.  Spawning site fidelity and apparent annual survival of walleye (Sander vitreus) differs between a Lake Huron and Lake Erie tributary.  Ecology of Freshwater Fish.  27: 339-349.

2017

Physiological and Biochemical Zoology

McGaw, I.J., C. Steell, T.E. Van Leeuwen, E.J. Eliason and S.J. Cooke.  2017.  Application of miniature heart-rate data loggers for use in free moving decapod crustaceans: method development and validation.  Physiological and Biochemical Zoology.  91(1):731-739.

 

American Fisheries Society Logo

Gallagher, A.J., P. Szekeres, S.J. Cooke, and J.M. Farrell.  2017. Tracking young-of-year northern pike and muskellunge: monitoring behavior and habitat use during fall outmigration from nursery sites. American Fisheries Society Symposium 00:000-000.

Environmental Management Cover Image

Brooks, J.L., C. Boston, S. Doka, D. Gorsky, K. Gustavson, D. Hondorp, D. Isermann, J. D. Midwood, T.C. Pratt, A. M. Rous, J. L. Withers, C.C. Krueger, & S. J. Cooke. 2017. Use of fish telemetry in rehabilitation planning, management, and monitoring in Areas of Concern in the Laurentian Great Lakes. Environmental Management.  60(6):1139–1154.

environmental biology of fishes cover image

Struthers, D.P., L.F.G. Gutowsky, E.C. Enders, K.E. Smokorowski, D.A. Watkinson, A.T. Silva, M. Cvetkovic, E. Bibeau and S.J. Cooke.  2017.  Factors influencing the spatial ecology of Lake Sturgeon and Walleye within an impounded reach of the Winnipeg River.  Environmental Biology of Fishes.  100:1085–1103.

River Research and Applications Image

Ford, M.I., C.K. Elvidge, D. Baker, T.C.  Pratt, K.E. Smokorowski, P. Patrick, M. Sills and S.J. Cooke.  2017.  Evaluating a light-louver system for behavioural guidance of age-0 white sturgeon.  River Research and Applications.  33:1286–1294.

Animal Biotelemetry Logo

Schoonyan, A., R.T. Kraus, M.D. Faust, A. Cook, C.S. Vandergoot, C.C. Krueger and S.J. Cooke.  2017.  Estimating Incision Healing Rate for Surgically Implanted Acoustic Transmitters from Recaptured Adult walleye (Sander vitreus). Animal Biotelemetry.  5:15.

Diggles, B.K., Arlinghaus, R., Browman, H. I., Cooke, S. J., Cowx, I. G., Kasumyan, A. O., Key, B., Rose, J. D., Sawynok, W., Schwab, A., Skiftesvik, A. B., Stevens, E. D., Watson, C. A. and Wynne, C. D. L.  2017.  Responses of larval zebrafish to low pH immersion assay generate multiple interpretations, questions and problems. Comment on Lopez-Luna et al. (2017).  Journal of Experimental Biology.  220:3191-3192.

Brownscombe, J.W., S.J. Cooke, D.A. Algera, K.C. Hanson, E.J. Eliason, N.J. Burnett, A.J. Danylchuk, S.G. Hinch, and A.P. Farrell.  2017.  Ecology of exercise in wild fish: integrating concepts of individual physiological capacity, behaviour and fitness through diverse case studies. Integrative and Comparative Biology. 57:281-292.

Cooke, S.J., V.M. Nguyen, S.T. Kessel, N.E. Hussey, N. Young and A.T. Ford.  2017.  Troubling and unanticipated issues at the frontier of animal tracking for conservation and management.  Conservation Biology.  31:1205-1207.

Fish and Fisheries

Lennox RJ, Alós J, Arlinghaus A, Horodysky A, Klefoth T, Monk CT, Cooke SJ. 2017 . What makes fish vulnerable to capture by hooks? A conceptual framework and a review of key determinants. Fish and Fisheries 18(5):986-1010.

Redfern, J.C., S.J. Cooke, R.J. Lennox, M.A. Nannini, D.H. Wahl and Kathleen M. Gilmour.  2017.  Effects of maternal cortisol treatment on offspring size, responses to stress, and anxiety related behavior in wild largemouth bass (Micropterus salmoides).  Physiology and Behavior.  180(15):15-24.

BioScience Cover Image

Lennox RJ, Aarestrup K, Cooke SJ, Cowley PD, Deng ZD, Fisk AT, Harcourt RG, Heupel M, Hinch SG, Holland KN, Hussey NE, Iverson SJ, Kessel ST, Kocik JF, Lucas MC, Mills Flemming J, Nguyen VM, Stokesbury MJW, Vagle S, VanderZwaag DL, Whoriskey FG, Young N. 2017. Envisioning the future of aquatic animal tracking: Technology, science, and application. BioScience. 67(10):884-896.

Fish and Fisheries

Birnie-Gauvin, K., D. Costantini, S.J. Cooke, and W.G Willmore. 2017. A comparative and evolutionary approach to oxidative stress in fish: a review. Fish and Fisheries. 18: 928-942. doi: 10.1111/faf.12215

Lawrence, M.J., A.J. Zolderdo and S.J. Cooke.  2017.  The consequences of war on the natural environment.  Pages 48-62 in W.H. Wiist and S.K. White, Eds.  Preventing War and Promoting Peace: A Guide for Health Professionals. Cambridge University Press, UK.

Lynch, A.J., I.G. Cowx, E. Fluet-Chouinard, S.M. Glaser, S.C. Phang, T.D. Beard, Jr., S.D. Bower, J.L. Brooks, D.B. Bunnell, J.E. Claussen, S.J. Cooke, Y.-C. Kao, K. Lorenzen, B.J.E. Myers, A.J. Reid, J.J. Taylor and S. Youn.  2017.  Inland fisheries – invisible but integral to the UN Sustainable Development Agenda for ending poverty by 2030.  Global Environmental Change. 47: 167-173.

Song, A.M., Bower, S.D., Onyango, P., Cooke, S.J., Chuenpagdee, R. 2017. Inter-Sectoral Governance of Inland Fisheries: Research Needs and Foci.  Pages 1 to 17 in Inter-sectoral governance of inland fisheries. TBTI Publication Series, E-01/2017. Too Big To Ignore-WorldFish. St John’s, Canada.

Peiman, K.S., K. Birnie-Gauvin, M.H. Larsen, S.F. Colborne, K.M. Gilmour, K. Aarestrup, W.G. Willmore and S.J. Cooke. 2017.  Morphological, physiological and dietary covariation in migratory and resident adult brown trout (Salmo trutta). Zoology.  123:79-90.

Lennox, R.J., T.B. Havn, E.B. Thorstad, E. Liberg, S.J. Cooke and I. Uglem. 2017. Behaviour and survival of wild Atlantic salmon (Salmo salar) captured and released while surveillance angling for escaped farmed salmon. Aquaculture Environment Interactions. 09: 311–319.

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Lennox RJ, Filous A, Danylchuk SC, Cooke SJ, Brownscombe JW, Friedlander AM, Danylchuk AJ. 2017. Factors influencing post-release predation for a catch-and-release tropical flats fishery with a high predator burden. North American Journal of Fisheries Management 37:1045–1053.

Nguyen, V.M.Young, M., Hinch, S.G., Cooke, S.J. 2016. Getting past the blame game: convergence and divergence in perceived threats to salmon resources among anglers and indigenous fishers in Canada’s lower Fraser River. AMBIODOI 10.1007/s13280-016-0769-6. 

Cooke, S.J., S. Johansson, K. Andersson, B. Livoreil, G. Post, R. Richards, R. Stewart and A.S. Pullin. 2017. Better evidence, better decisions, better environment: Emergent themes from the first environmental evidence conference. Environmental Evidence. 6:15. https://doi.org/10.1186/s13750-017-0092-0

Elmer, L.K., C.M. O’Connor, D.P. Philipp, G. Van Der Kraak, K.M. Gilmour, W.G. Willmore, B.L. Barthel and S.J. Cooke. 2017.  Oxidative ecology of paternal care in wild smallmouth bass, Micropterus dolomieu.  Journal of Experimental Biology. 220:1905-1914.

Midwood JD, Peiman KS, Burt AEW, Sarker MY, Nannini MA, Wahl DH, and Cooke SJ. 2017. Size-dependent consequences of exogenous cortisol manipulation on overwinter survival and condition of largemouth bass. Journal of Experimental Zoology Part A. 327:5-17.

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Nguyen V.M., Brooks, J.L., Young, N., Lennox, R., Haddaway, N., Whoriskey, F., Harcourt, R., Cooke, S.J.  2017.  To share or not to share in the emerging era of big data: Perspectives from fish telemetry researchers on data sharing.  Canadian Journal of Fisheries and Aquatic Sciences.  74:1260-1274.

Cairns, N.A., L.J. Stoot, G. Blouin-Demers and S.J. Cooke. 2017. Using behavioral observations to develop escape devices for freshwater turtles entrapped in fishing nets.  Journal of Fish and Wildlife Management. 8:4-14.

Rytwinski T, Taylor JJ, Bennett JR, Smokorowski, KE, Cooke SJ. 2017. What are the impacts of flow regime changes on fish productivity in temperate regions? A systematic map protocol. Environmental Evidence. 6:13. DOI 10.1186/s13750-017-0093-z

Reviews in Fish Biology and Fisheries Cover Image

Paukert, C.P., A.J. Lynch, T.D. Beard, Y. Chen, S.J. Cooke, M.S. Cooperman, I.G. Cowx, L. Ibengwe, D.M. Infante, B.J.E. Myers, N. Phú Hòa, and I.J. Winfield. 2017.  Designing a global assessment of climate change on inland fishes and fisheries: knowns and needs.  Reviews in Fish Biology and Fisheries.  DOI 10.1007/s11160-017-9477-y

canadian journal of fisheries and aquatic sciences cover Image

Cooke, E.L.L., A.D.M. Wilson, C.K. Elvidge and S.J. Cooke.  2017.  Does capture method or the presence of aquatic protected areas influence the selective harvest of behavioural types in largemouth bass?  Canadian Journal of Fisheries and Aquatic Sciences.  00:000-000 dx.doi.org/10.1139/cjfas-2016-0192

Patterson, D.A., Robinson, K.A., Raby, G.D., Bass, A.L., Houtman, R., Hinch, S.G., and Cooke, S.J. 2017. Guidance to Derive and Update Fishing-Related Incidental Mortality Rates for Pacific Salmon. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/011. vii + 56 p.

Ogburn, M.B., A-L. Harrison, F. Whoriskey, S.J. Cooke, J.E. Mills-Flemming and L.G. Torres. 2017.  Addressing challenges in the application of animal movement ecology to aquatic conservation and management.  Frontiers in Marine Science. 04:70 doi: 10.3389/fmars.2017.00070

Birnie-Gauvin, K., K.S. Peiman, M.H. Larsen, K. Aarestrup, W.G. Willmore and S.J. Cooke. 2017.  Short-term and long-term effects of transient exogenous cortisol manipulation on oxidative stress in juvenile brown trout.  Journal of Experimental Biology. 220: 1693-1700.

Comparative Biochemistry and Physiology Cover Image

Lawrence, M.J., E.J. Eliason, J.W. Brownscombe, K.M. Gilmour, J.W. Mandelman and S.J. Cooke. 2017. An experimental evaluation of the role of the stress axis in mediating predator-prey interactions in wild marine fish. Comparative Physiology and Biochemistry A. 207: 21-29.

Lennox RJ, Cooke SJ, Davis CR, Gargan P, Hawkins LA, Havn TB, Johansen MR, Kennedy R, Richard A, Svenning M-A, Uglem I, Webb J, Whoriskey FG, Thorstad EB. 2017. Pan-Holarctic assessment of post-release mortality of angled Atlantic salmon Salmo salar. Biological Conservation 209: 150-158

Struthers, D.P., L.F.G. Gutowsky, E. Enders, K. Smokorowski, D. Watkinson, E. Bibeau and S.J. Cooke. 2017.  Evaluating riverine hydrokinetic turbine operations relative to the spatial ecology of wild fishes. Journal of Ecohydraulics. 2:53-67.

Costa, M.J., R.J. Lennox, C. Katopodis and S.J. Cooke. 2017.  Is there evidence for flow variability as an organism level stressor in fluvial fish?  Journal of Ecohydraulics. 2:68-83.

Messmer, V., M.S. Pratchett, A.S. Hoey, A.J. Tobin, D.J. Coker, S.J. Cooke and T.D. Clark. 2017. Global warming will disproportionately affect larger adults in a predatory coral reef fish. Global Change Biology. 23: 2230–2240.

environmental biology of fishes cover image

Twardek, W.M., A.D. Shultz, J.E. Claussen, S.J. Cooke, J.A. Stein, J.B. Koppelman, F.J.S. Phelan and D.P. Philipp. 2017. Potential consequences of angling on nest-site fidelity in largemouth bass. Environmental Biology of Fishes. 100: 611-617.

Bulletin of Marine Science Cover Image

Bower, S.D., H. Kooner, H. Ludwig, S. Lumb, J. Raina, J. Webb, Z. Zrini, C.M. O’Connor and S.J. Cooke. 2017.  Diel patterns of hooking depth for active and passive angling methods for two freshwater teleost fishes.  Bulletin of Marine Science.  93:507-517.

Bulletin of Marine Science Cover Image

Hammerschlag, N., C. Meyer, M. Grace, S. Kessell, T. Sutton, E.S. Harvey, C. Paris, D.W. Kerstetter and S.J. Cooke.  2017. Shining a light on fish at night: An overview of patterns and processes operating in fish and fisheries at night and in the perpetual darkness of deep and polar seas. Bulletin of Marine Science. 93:253-284.

aquatic conservation cover image

Jain-Schlaepfer, S.M.R., G. Blouin-Demers, S.J. Cooke and G. Bulté. 2017. Do boating and basking mix? The effect of basking disturbances by motorboats on the body temperature and energy budget of the northern map turtle. Aquatic Conservation. 27: 547-558.

Canadian Journal of Zoology Cover Image

Belanger, C.B., Peiman, K.S., Vera-Chang, M.N., Moon, T.W., and Cooke, S.J.  2017.  Pumpkinseed sunfish (Lepomis gibbosus) from littoral and limnetic habitats differ in stress responsiveness independent of environmental complexity and presence of conspecifics. Canadian Journal of Zoology  95: 193-202.

Pinder, A.C., R. Velterop, S.J. Cooke, and J.R. Britton.  2017.  Consequences of catch-and-release angling for black bream Spondyliosoma cantharus, during the parental care period: implications for management.  ICES Journal of Marine Science.  74:1-7.

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Gallagher, A.J., E.R. Staaterman, S.J. Cooke, N. Hammerschlag. In Press. Behavioural responses to fisheries capture among sharks caught using experimental fishery gear. Canadian Journal of Fisheries and Aquatic Sciences. 74:1-7.

Ecology of Freshwater Fish Cover Image

Wilson, A.D.M., T. Hayden, C.S. Vandergoot, R.T. Kraus, J.M. Dettmers, S.J. Cooke and C.C. Krueger. 2017.  Do intracoelomic telemetry transmitters alter the post-release behaviour of migratory fish?  Ecology of Freshwater Fish. 26: 292–300.

Teffer, A.K., S.G. Hinch, K.M. Miller, D.A. Patterson, A.P. Farrell, S.J. Cooke, A.L. Bass, P. Szekeres and F. Juanes.  2017.  Capture severity, infectious disease processes and sex influence post-release mortality of sockeye salmon bycatch.  Conservation Physiology.  10.1093/conphys/cox017

Fisheries Cover Image

Lynch, A. J., S.J. Cooke, T. D. Beard, Jr., Y.-C. Kao, K. Lorenzen, A. M. Song, M. S. Allen, Z. Basher, D. B. Bunnell, E. V. Camp, I. G. Cowx, J. A. Freedman, V. M. Nguyen, J. K. Nohner, M. W. Rogers, Z. A. Siders, W. W. Taylor, and S-J. Youn. 2017. Grand challenges in the management and conservation of North American inland fish and fisheries. Fisheries. 42:2, 115-124.

Fisheries Research Cover Image

Gagne, T.O., K.L. Ovitz, L.P. Griffin, J.W. Brownscombe, S.J. Cooke, and A.J. Danylchuk. 2017. Evaluating the consequences of catch-and-release recreational angling on golden dorado (Salminus brasiliensis) in Salta, Argentina. Fisheries Research.

BioScience Cover Image

Ford, A.T., S.J. Cooke, J.R. Goheen, and T.P. Young. 2017. Conserving megafauna or sacrificing biodiversity? A response to Ripple et al. BioScience. 00:000-000

River Research and Applications Image

Burnett, N.J., S.G. Hinch, N.N. Bett, D.C. Braun, M.T. Casselman, S.J. Cooke, A. Gelchu, S. Lingard, C.T. Middleton, V. Minke-Martin, and C.F.H. White. 2017. Reducing carryover effects on migration and spawning success of salmon through a management experiment of dam flows. River Research and Applications.  33:3-15.

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Brownscombe, J.W., T.P. Parma, J. Almeida, E. Giesbrecht. J. Batson, X. Chen, S. Wesch, T.D. Ward, C. O’Connor, and S.J. Cooke. 2017. The efficacy of assisted ventilation techniques for facilitating the recovery of fish that are exhausted from simulated angling stress. Fisheries Research.

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Bower, S.D., A.J. Danylchuk, R. Raghavan, S. Clark Danylchuk, A.C. Pinder, A.M. Alter, and S.J. Cooke. 2017. Involving recreational fisheries stakeholders in development of research and conservation priorities for mahseer (Tor spp.) of India through collaborative workshops. Fisheries Research. 186:665-681.

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Cooke, S.J., L.Y. Palensky, and A.J. Danylchuk. 2017. Inserting the angler into catch-and-release angling science and practice. Fisheries Research. 186:599-600.

Bower, S.D., Raghavan, R., Mahesh, N., Danylchuk A.J., Cooke, S.J.  Inter-sectoral fisheries governance issues and solutions on the Cauvery River, India. In: A.M. Song, S.D. Bower, P. Onyango, S.J. Cooke, R. Chuenpagdee (Eds.), Inter-Sectoral Governance of Inland Fisheries. TBTI Publication Series, St John’s, NL, Canada.

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Danylchuk, A.J., J. Tiedemann, and S.J. Cooke. 2017. Perceptions of recreational fisheries conservation within the fishing industry: knowledge gaps and learning opportunities identified at east coast trade shows in the United States.  Fisheries Research. 186:681-687.

Physiological and Biochemical Zoology

Algera, D.A., L.F.G. Gutowsky, A.J. Zolderdo and S.J. Cooke.  2017. Parental Care in a Stressful World: Experimentally Elevated Cortisol and Brood Size Manipulation Influence Nest Success Probability and Nest-Tending Behavior in a Wild Teleost Fish Physiological and Biochemical Zoology.  90(1):85–95.

Barkley, A.N., S.J. Cooke, A.T. Fisk, K. Hedges and N.E. Hussey.  2017.  Capture-induced  stress in deep-water Arctic fish.  Polar Biology. 40:213–220.

Cooke, S.J., K.R. Hultine, J.L. Rummer and C.E. Franklin.  2017.  Reflections and progress in conservation physiology.  Conservation Physiology.  05:1-3.

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Magel,  J.M.T., N. Pleizier, A.D.M. Wilson, A.D. Shultz, M.N. Vera-Chang, T.W. Moon and S.J. Cooke. 2017.  Do physical habitat complexity and predator cues influence the baseline and stress-induced glucocorticoid levels of a mangrove-associated fish?  Comparative Biochemistry and Physiology A. 203:281-287.

Xia, J., Y. Ma, C. Fu, S. FuIn and S.J. Cooke. 2017. Effects of temperature acclimation on the critical thermal limits and swimming performance of Brachymystax lenok tsinlingensis: a threatened fish in Qinling Mountain region of China.  Ecological Research. 32:61-70.

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Bouyoucos, I.A., D.W. Montgomery, J.W. Brownscombe, S.J. Cooke, C.D. Suski, J.W. Mandelman and E.J. Brooks. 2017. Swimming speeds and metabolic rates of semi-captive juvenile lemon sharks (Negaprion brevirostris, Poey) estimated with acceleration biologgers. Journal of Experimental Marine Biology and Ecology. 486:245-254.

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Kerr SM, Ward TD, Lennox RJ, Brownscombe JW, Chapman JM, Gutowsky LFG, Logan JM, Twardek WM, Elvidge CK, Danylchuk AJ, Cooke SJ. 2017. Influence of hook type and live bait on the hooking performance of inline spinners in the context of catch-and-release brook trout Salvelinus fontinalis fishing in lakes. Fisheries Research 186:642-647.

2016

McLean, M.F., Hanson, K.C., Cooke, S,J., Hinch, S.G., Patterson, D.A., Nettles, T.L., Litvak, M.K., Crossin, G.T. 2016. Physiological stress response, reflex impairment, and delayed mortality of white sturgeon Acipenser transmontanus exposed to simulated fisheries stressors. Conservation Physiology 4: cow031

Sopinka, N.M., M.R. Donaldson, C.M. O’Connor, C.D. Suski and S.J. Cooke.  2016.  Stress indicators in fish.  Pages 406-436 in Fish Physiology, Vol. 35, Biology of Stress in Fish (eds. C.B. Schreck, L. Tort, A.P. Farrell and C.J. Brauner), Academic Press, Amsterdam.

Harvey-Lavoie, S., S.J. Cooke, G. Guénard and D. Boisclair. 2016. Differences in movements of northern pike inhabiting rivers with contrasting flow regimes.  Ecohydrology. 9:1687-1699.

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Hayden, T.A., C.M. Holbrook, T.R. Binder, J.M. Dettmers, S.J. Cooke, C.S. Vandergoot and C.C. Krueger.  2016.  Probability of acoustic transmitter detections by receiver lines in Lake Huron: results of multi-year field tests and simulations.  Journal of Animal Biotelemetry.  04:19.

Eales, J., N.R. Haddaway, C. Bernes, S.J. Cooke, B.G. Jonsson, J. Kouki, and G. Petrokofsky. 2016. What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond tree regeneration, pyrophilous and saproxylic species? A systematic review protocol. Environmental Evidence. 05:24.

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Young, N., M. Corriveau, V.M. Nguyen,  S.J. Cooke and S.G. Hinch.  2016.  How do potential knowledge users evaluate new claims about a contested resource? Problems of power and politics in knowledge exchange and mobilization.  Journal of Environmental Management. 184: 380-388.

McKenzie, D.J., M. Axelsson, D. Chabot, G. Claireaux, S.J. Cooke, R.A. Corner, G. De Boeck, P. Domenici, P.M. Guerreiro, B. Hamer, C. Jørgensen, S.S. Killen, S. Lefevre, S. Marras, B. Michaelidis, G.E. Nilsson, M.A. Peck, A. Perez-Ruzafa, A.D. Rijnsdorp, H.A. Shiels, J.F. Steffensen, J.C. Svendsen, M.B.S. Svendsen, L.R. Teal, J. van der Meer, T. Wang, J.M. Wilson, R.W. Wilson and J.D. Metcalfe.  2016. Conservation physiology of marine fishes: State of the art and prospects for policy.  Conservation Physiology. 4:1-20.

Key, B., R. Arlinghaus, H.I. Browman, S.J. Cooke, I.G. Cowx, B.K. Diggles, J.D. Rose, W. Sawynok, A. Schwab, A.B. Skiftesvik, E.D. Stevens and C.A. Watson.  2016.  Problems with equating thermal preference with “emotional fever” and sentience. Comment on Rey et al. (2015) Fish can show emotional fever: stress-induced hyperthermia in zebrafish.  Proceedings of the Royal Society of London B. 00:000-000.

Fisheries Cover Image

Dunmall, K.M., and S.J. Cooke. 2016. Narrow or broad: diverse academic pathways to a career in fisheries science and management. Fisheries. 41:477-478.

Midwood, J.D., M.H. Larsen, K. Aarestrup and S.J. Cooke. 2016. Stress and food deprivation: linking physiological state to migration success in a teleost fish. Journal of Experimental Biology. 219: 3712-3718

Transactions of the American Fisheries Society

Cooke, S.J., C.J.A. Cooke and J.W. Brownscombe. 2016. Ultralight or heavyweight? The interactive effects of gear strength and air exposure on reflex impairment in largemouth bass. Transactions of the American Fisheries Society. 145:6,1202-1207.

Marriner, B.A., A.B.M. Baki, D.Z. Zhu, S.J. Cooke and C. Katopodis. 2016.  The hydraulics of a vertical slot fishway: a case study on the multi-species Vianney-Legendre fishway in Quebec, Canada.  Ecological Engineering.  90:190-202

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McClellan Press, K., J. Mandelman, E. Burgess, S.J. Cooke, V.M. Nguyen, and A.J. Danylchuk. 2016.  Catching sharks: recreational saltwater angler behaviors and attitudes regarding shark encounters and conservation.  Aquatic Conservation: Marine and Freshwater Ecosystems. 26:689-702.

 

Cooke, S.J., E.H. Allison, T.D. Beard, R. Arlinghaus, A.H. Arthington, D.M. Bartley, I.G. Cowx, C. Fuentevilla, N. J. Leonard, K. Lorenzen, A.J. Lynch, V.M. Nguyen, S.-J. Youn, W.W. Taylor and R.L. Welcomme. 2016.  On the sustainability of inland fisheries: Finding a future for the forgotten.  Ambio. 45:753-764.

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Taylor, J.J., N.M. Sopinka, S.M. Wilson, S.G. Hinch, D.A. Patterson, S.J. Cooke and W.G. Willmore. 2016. Examining the relationships between egg cortisol and oxidative stress in developing wild sockeye salmon (Oncorhynchus nerka).  Comparative Biochemistry and Physiology A. 200:87-93.

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Bower, S.D., A.J. Danylchuk, R. Raghavan, S. Clark-Danylchuk, A. Pinder, and S.J. Cooke. 2016. Rapid assessment of the physiological impacts caused by catch-and-release angling on blue-finned mahseer (Tor sp.) of the Cauvery River, India. Fisheries Management and Ecology  23:208-217.

Patterson, D.A., S.J. Cooke, S.G. Hinch, K.A. Robinson, N. Young, A.P. Farrell and K.M. Miller. 2016. A perspective on physiological studies supporting the provision of scientific advice for the management of Fraser River sockeye salmon (Oncorhynchus nerka). Conservation Physiology. 4:1

Young, N., Nguyen, V.M., Corriveau, M., Cooke, S.J., Hinch, S.G. 2016. Knowledge users’ perspectives and advice on how to improve knowledge exchange and mobilization in the case of a co-managed fishery, Environmental Science & Policy. 66: 170-178.

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Cooke, S.J. D.M. Bartley, T.D. Beard, I.G. Cowx, C. Goddard, C. Fuentevilla, N. Leonard, A.J. Lynch, K. Lorenzen and W.W. Taylor. 2016. From Ideas to Action: Ten Steps to Responsible Inland Fisheries that Support Livelihoods, Food Security, and Healthy Aquatic Ecosystems.  Pages 343-351 in C. Goddard, N. Leonard, W.W. Taylor and D. Bartley, Eds.  Freshwater, Fish, and the Future: Proceedings of the Global Cross-Sectoral Conference.  American Fisheries Society, Bethesda, MD.

 

 

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Beard T. D., E. H. Allison, D.M. Bartley, I.G. Cowx, , S. J. Cooke, C. Fuentevilla, A.J. Lynch, and W.W. Taylor. 2016.  Inland fish and fisheries:  A call to action.  Pages 1-6 in C. Goddard, N. Leonard, W.W. Taylor and D. Bartley, Eds.  Freshwater, Fish, and the Future: Proceedings of the Global Cross-Sectoral Conference.  American Fisheries Society, Bethesda, MD.

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Cooke, S.J., A.H. Arthington, S.A. Bonar, S.D. Bower, D.B. Bunnell, R.E.M. Entsua-Mensah, S. Funge-Smith, J.D. Koehn, N.P. Lester, K. Lorenzen, S. Nam, R.G. Randall, P. Venturelli and I.G. Cowx.  2016.  Assessment of inland fisheries: A vision for the future.   Pages 45-62 in C. Goddard, N. Leonard, W.W. Taylor and D. Bartley, Eds.  Freshwater, Fish, and the Future: Proceedings of the Global Cross-Sectoral Conference.  American Fisheries Society, Bethesda, MD.

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Lorenzen, K., I.G. Cowx, R.E.M. Entsua-Mensah, N.P. Lester, J.D. Koehn, R.G. Randall, S. Nam, S.A. Bonar, D.B. Bunnell, P. Venutrelli, S.D. Bower and S.J. Cooke. 2016. Stock assessment in inland fisheries: a foundation for sustainable use and conservation. Reviews in Fish Biology and Fisheries. 26:405–440.

Gupta, N., S.D. Bower, S.J. Cooke, A.J. Danylchuk and R. Raghavan. 2016. Practices and attitudes of Indian catch-and-release anglers: identifying opportunities for advancing the management of recreational fisheries. Journal of Threatened Taxa. 8(4): 8659–8665.

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Arlinghaus, R., S.J. Cooke, S.G. Sutton, A.J. Danylchuk, K. De. M. F. Freire, J. Alos, E.T. Da Silva, I.G. Cowx and R. Van Anrooy. 2016. Recommendations for the future of recreational fisheries to prepare the social-ecological system for coping with change. Fisheries Management and Ecology.23; 177–186

Thiem, J.D., J.W. Dawson, D. Hatin, A.J. Danylchuk, P. Dumont, A.C. Gleiss, R.P. Wilson and S.J. Cooke. 2016. Swimming activity and energetic costs of adult lake sturgeon during fishway passage. Journal of Experimental Biology. 219; 2534-2544.

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Nguyen, V.M., A.J. Lynch, N. Young, I.G. Cowx, T.D. Beard Jr., W.W. Taylor and S.J. Cooke. 2016. To manage inland fisheries is to manage at the social-ecological watershed scale. Journal of Environmental Management. 181; 312-325.

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Hughes, R.M., C. B. M. Alves, F. Amezcua, J. Claussen, S. J. Cooke, I. G. Cowx, K. D. Fausch, M. T. Ferreira, W. G. Franzin, D. Hall, M. O. Ipinmoroti, R. Ligeiro, N. Mercado-Silva, M. Miller, P. S. Pompeu, D. C. Schmidt, L. G. M. Silva and B. F. Terra.  2016.  Preparing for international research and teaching.  Fisheries.  41:464-465.

Cooke, S.J., J.C. Rice, K.A. Prior, R. Bloom, O. Jensen, D.R. Browne, L.A. Donaldson, J.R. Bennett, J.C. Vermaire and G. Auld. 2016. The Canadian context for evidence-based conservation and environmental management.  Environmental Evidence. 5:14

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Whitney, J.E., R. Al-Chokhachy, D.B. Bunnell, C.A. Caldwell, S.J. Cooke, E.J. Eliason, M. Rogers, A. Lynch and C. Paukert. 2016. Physiological basis of climate change impacts on North American inland fishes. Fisheries. 41:7, 332-345.

Donaldson, L.A., and S.J. Cooke. 2016. The effectiveness of non-native fish eradication techniques in freshwater ecosystems: a systematic review protocol. Environmental Evidence. 5(12):1-10.

Cooke, S.J., E.G. Martins, D.P. Struthers, L.F.G. Gutowsky, M. Power, S.E. Doka, J.M. Dettmers, D.A. Crook, M.C. Lucas, C.M. Holbrook and C.C. Krueger. 2016. A moving target – incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations. Environmental Monitoring and Assessment. 188:Article #239.

Lennox R.J., S.J. Cooke, O.H. Diserud, T.B. Havn, M. Rognli, M. Johansen, E.B. Thorstad, F.G. Whoriskey and I. Uglem. 2016. Use of simulation approaches to evaluate the consequences of catch-and-release angling on the migration behaviour of adult Atlantic salmon (Salmo salar). Ecological Modeling. 333: 43-50.

Raby, G.D., M.T. Casselman, S.J. Cooke, S.G. Hinch, A.P. Farrell and T.D. Clark. 2016.  Aerobic scope increases throughout an ecologically relevant temperature range in coho salmon.  Journal of Experimental Biology. 219: 1922-1931.

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Lennox, R.J., M. Falkegård, L. A. Vøllestad, S.J. Cooke, and E.B. Thorstad. 2016. Influence of harvest restrictions on angler release behaviour and size selection in a recreational fishery. Journal of Environmental Management. 176: 139–148.

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Pankhurst, K., J.D. Midwood, H. Wachelka and S.J. Cooke. 2016. Comparative spatial ecology of sympatric adult muskellunge and northern pike during a one year period in an urban reach of the Rideau River, Canada. Environmental Biology of Fishes. 99:409-421.

Zolderdo, A.J., D.A. Algera, M.J. Lawrence, K.M. Gilmour, M.D. Fast, J. Thuswaldner, W. Willmore and S.J. Cooke. 2016. Stress, nutrition and parental care in a teleost fish: Exploring mechanisms with supplemental feeding and cortisol manipulation. Journal of Experimental Biology. 219: 1237-1248.

Environmental Reviews Cover Image

Lynch, A. J., S. J. Cooke, A. Deines, S. Bower, D. B, Bunnell, I. G. Cowx, V. M. Nguyen, J. Nonher, K. Phouthavong, B. Riley, M. W. Rogers, W.W. Taylor, W.M. Woelmer, S. Youn and T. D. Beard, Jr. 2016. The social, economic, and ecological importance of inland fishes and fisheries. Environmental Reviews. 24: 115-121.

Lennox, R.J., I. Mayer, T.B. Havn, M.R. Johansen, K. Whoriskey, S.J. Cooke, E.B. Thorstad and I. Uglem. 2016.  Consequences of recreational angling and air exposure on the physiological status and reflex impairment of European grayling (Thymallus thymallus).  Boreal Environment Research. 21: 461–470.

Clark, T.D., N.B. Furey, E.L. Rechisky, M.K. Gale, K.M. Jeffries, A.D. Porter, M.T. Casselman, A.G. Lotto, D.A. Patterson, S.J. Cooke, A.P. Farrell, D.W. Welch and S.G. Hinch. 2016.  Tracking wild sockeye salmon smolts to the ocean reveals distinct regions of nocturnal movement and high mortality. Ecological Applications. 26: 959–978.

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Lennox, R.J., O.H. Diserud, S.J. Cooke, E.B. Thorstad, F.G. Whoriskey, Ø. Solem, T.B. Havn and I. Uglem. 2016.  Switching between gear types increases recapture rates of Atlantic salmon (Salmo salar) in catch-and-release fisheries. Ecology of Freshwater Fish. 25:422-428.

Cooke, S.J. 2016.  Unraveling the mystery of marine fish migration.  Book review of Secor’s “Ecology of Marine Fish Migration”. Ecology. 97:1086–1087

Ward, T.D., D.A. Algera, A.J. Gallagher, E. Hawkins, A. Horodysky, C. Jørgensen, S.S. Killen, D.J. McKenzie, J.D. Metcalfe, M.A. Peck, M. Vu, and S.J. Cooke. 2016. Understanding the Individual to Implement the Ecosystem Approach to Fisheries Management. Conservation Physiology. 4(1):cow005.  doi:10.1093/conphys/cow005

 

Cooke, S.J., V.M. Nguyen, J.M. Dettmers, R. Arlinghaus, M.C. Quist, D. Tweddle, O.L.F. Weyl, R. Raghavan, M. Portocarrero-Aya, E. Agudelo Cordoba, and I.G. Cows. 2016. Sustainable inland fisheries – Perspectives from the recreational, commercial and subsistence sectors from around the globe. Pages 467-505  in G.P. Closs, M. Krkosek and J.D. Olden, Eds. Conservation of Freshwater Fishes. Cambridge University Press, Cambridge.

Stevens, E.D., R. Arlinghaus, H. Browman, S.J. Cooke, I.G. Cowx, B.K. Diggles, B. Key, J.D. Rose, W. Sawynok, A. Schwab, A.B. Skiftesvik, C.A. Watson and C.D.L. Wynne.  2016.  Stress is not pain. Comment on Elwood and Adams (2015) Electric shock causes physiological stress responses in shore crabs, consistent with prediction of pain.  Biology Letters. 12:20151006. doi:10.1098/rsbl.2015.1006.

Cooke, S.J.  2016.  Spinning our wheels and deepening the divide: Call for an evidence-based approach to the fish pain debate.  Animal Sentience.  2016.072.

Killen, S.S., B. Adriaenssens, S. Marras, G. Claireaux and S.J. Cooke.  2016.  Context-dependency of trait repeatability and its relevance for management and conservation of fish populations.  Conservation Physiology. 4:10.1093/conphys/cow007.

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Hatry, C., J.D. Thiem, D. Hatin, P. Dumont, K.E. Smokorowski and S.J. Cooke.  2016.  Fishway approach behaviour and passage of three redhorse species (Moxostoma anisurum, M. carinatum, and M. macrolepidotum) in the Richelieu River, Quebec.  Environmental Biology of Fishes. 99:249-263.

Fish and Fisheries

Cooke, S.J., Z.S. Hogan, P.A. Butcher, M.J.W. Stokesbury, R. Raghavan, A.J. Gallagher, N. Hammerschlag and A.J. Danylchuk.  In Press.  Angling for endangered fish: Conservation problem or conservation action?  Fish and Fisheries. 17: 249-265.

Horodysky, A.Z., S.J. Cooke, J.E. Graves and R.W. Brill.  2016.  Fisheries conservation on the high seas:  Linking conservation physiology and fisheries ecology for the management of large pelagic fishes.  Conservation Physiology.  4:10.1093/conphys/cov059.

Crossin, G.T., O.P. Love, S.J. Cooke and T.D. Williams.  2016.  Glucocorticoid manipulations in free-living animals: considerations of dose delivery, life-history context, and reproductive state.  Functional Ecology.  30:116-125. doi: 10.1111/1365-2435.12482.

 

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King, G.D., J.M. Chapman, S.J. Cooke and C.D. Suski.  2016.  Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.  Science of the Total Environment. 547:87-94.

Filguiera, R., J.M. Chapman, C.D. Suski, and S.J. Cooke. 2016. The influence of watershed land use cover on stream fish diversity and size-at-age of a generalist fish. Ecological Indicators. 60: 248-257.

Fisheries Research Cover Image

Bower, S.D., A.J. Danylchuk, J.W. Brownscombe, J.D Thiem, and S.J. Cooke.  2016.  Evaluating consequences of catch-and-release angling on the physiological status of peacock bass (Cichla ocellaris) in Puerto Rico: A rapid assessment approach. Fisheries Research.  175:95-102. dx.doi.org/10.1016/j.fishres.2015.11.014

 

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Belanger, C.B., M.N. Vera-Chang, T.W. Moon, J.D. Midwood, C.D. Suski and S.J. Cooke.  2016.  Seasonal variation in baseline and maximum whole-body glucocorticoid concentrations in a small-bodied stream fish independent of habitat quality.  Comparative Biochemistry and Physiology A.  192:1-6. dx.doi.org/10.1016/j.cbpa.2015.10.027.

Madliger, C.L., S.J. Cooke, E.J. Crespi, J.L. Funk, K.R. Hultine, K.E. Hunt, J.R. Rohr, B.J. Sinclair, C.D. Suski, C.K.R. Willis and O.P. Love.  2016.  Success stories and emerging themes in conservation physiology. Conservation Physiology. 4:DOI: 10.1093/conphys/cov057.

2015

Hlevca, B., S.J. Cooke, J.D. Midwood, S.E. Doka, R. Portiss and M. Wells. 2015. Characterization of water temperature variability within a harbour connected to a large lake. Journal of Great Lakes Research. 41:1010-1023.

Endangered Species Research Cover Image

Gallagher, A.J., S.J. Cooke, and N. Hammerschlag. 2015467. Risk perceptions and conservation ethic among recreational anglers targeting threatened sharks in the subtropical Atlantic. Endangered Species Research. 29: 81-93 doi: 10.3354/esr00704.

 

 

Murchie, K.J., S. Clark Danylchuk, A.J. Danylchuk, and S.J. Cooke. 2015. Fish community and habitat assessments of three adjacent tidal creeks on Cape Eleuthera, The Bahamas.  Pages 67-80 in K.J. Murchie and P.P. Daneshgar (Eds.), Proceedings of the Second International Symposium on Mangroves as Fish Habitat. Mazatlán, Mexico.  American Fisheries Society, Bethesda, Maryland.

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Brownscombe, J.W., L. Griffin, T. Gagne, C.R. Haak, S.J. Cooke and A.J. Danylchuk.  2015.  Physiological stress and reflex impairment of recreationally angled bonefish in Puerto Rico.  Environmental Biology of Fishes.  98:2287-2295.

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Adams, A.J., and S.J. Cooke. 2015. Advancing the science and management of flats fisheries for bonefish, tarpon, and permit. Environmental Biology of Fishes. 98:2123-2131.

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Murchie, K.J., A.D. Shultz, J.A. Stein, S.J. Cooke, J. Lewis, J. Franklin, G. Vincent, E.J. Brooks, J.E. Claussen and D.P. Philipp.  2015.  Defining adult bonefish (Albula vulpes) movement corridors around Grand Bahama in the Bahamian Archipelago.  Environmental Biology of Fishes. 98:2203-2212.

Cooke, S.J., R. Arlinghaus, B.M. Johnson, and I.G. Cowx. 2015. Recreational fisheries in inland waters. Pages 449-465 in J. Craig, editor. Freshwater Fisheries Ecology. Blackwell Science, UK.

Arlinghaus, R., K. Lorenzen, B.M. Johnson, S.J. Cooke, and I.G. Cowx. 2015. Managing freshwater fisheries: addressing habitat, people and fish. Pages 557-579 in J. Craig, editor. Freshwater Fisheries Ecology. Blackwell Science, UK.

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Midwood, J.D., M.H. Larsen, M. Boel, K. Aarestrup and S.J. Cooke.  2015.  An experimental field evaluation of winter carryover effects in semi-anadromous brown trout (Salmo trutta).  Journal of Experimental Zoology A. 323A:645–654.

Drenner, S.M., S.G. Hinch. E.G. Martins, N. Furey, T.D. Clarke, S.J.Cooke, D. Patterson, D. Robichaud, D.W. Welch. A.P. Farrell and R. Thomson. 2015. Environmental conditions and physiological state influence estuarine movements of homing sockeye salmon.  Fisheries Oceanography.  24: 307–324.

Raby, G.D., S.G. Hinch, D.A. Patterson, J.A. Hills, L.A. Thompson, and S.J. Cooke. 2015. Mechanisms to explain purse seine bycatch mortality of coho salmon. Ecological Applications. 25: 1757-1775.

Raby, G.D., M.R. Donaldson, S.G. Hinch, T.D. Clark, E.J. Eliason, K.M. Jeffries, K.V. Cook, A. Teffer, A.L. Bass, K.M. Miller, D.A. Patterson, A.P. Farrell and S.J. Cooke. 2015. Fishing for effective conservation: context and biotic variation are keys to understanding the survival of Pacific salmon after catch-and-release.  Integrative and Comparative Biology. 55: 554-576.

 

 

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Handley, G., C.M. Frantz, P.M. Kocovsky, D.R. DeVries, S.J. Cooke and J. Claussen.  2015.  An examination of gender differences in the American Fisheries Society peer review process.  Fisheries.  40:442-451.

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Cooke, S.J., J.M. Chapman and J.C. Vermaire.  2015.  On the apparent failure of silt fences to protect freshwater ecosystems from sedimentation: a call for improvements in science, technology, training and compliance monitoring.  Journal of Environmental Management.  164:67-73.

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Philipp, D.P., J.E. Claussen, J.B. Koppelman, J.A. Stein, S.J. Cooke, C.D. Suski, D.H. Wahl, D.A.H. Sutter, and R. Arlinghaus.  2015.  Fisheries-induced evolution in largemouth bass – linking vulnerability to angling, parental care, and fitness.  American Fisheries Society Symposium.  82:223–234.

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Horodysky, A.Z., S.J. Cooke and R.W. Brill.  2015.  Physiology in the Service of Fisheries Science – Why Thinking Mechanistically Matters.  Reviews in Fish Biology and Fisheries.  25:425-447.

Gupta, N., S.D. Bower, R. Raghavan, A.J. Danylchuk, and S.J. Cooke. 2015. Status of recreational fisheries in India: development, issues and opportunities.  Reviews in Fisheries Science and Aquaculture. 23:291-301.

Lennox, R.J., J.W. Brownscombe, S.J. Cooke, A.J. Danylchuk, P.S. Moro, E.A. Sanches, and D. Garonne-Neto. 2015. Evaluation of catch-and-release angling practices for the fat snook Centropomus parallelus in a Brazilian estuary. Ocean and Coastal Management. 113:1-7.

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Havn, T.B., I. Uglem, Ø. Solem, S.J. Cooke, F.G. Whoriskey and E.B. Thorstad.  2015.  The effect of catch-and-release angling at high water temperatures on behavior and survival of Atlantic salmon during spawning migration.  Journal of Fish Biology. 87:342–359.

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Midwood, J.D., S.J. Kerr, P. Levick and S.J. Cooke.  2015.  Muskellunge science and management: progress through partnerships.  Environmental Biology of Fishes. 98:2031-2035.

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Maitland, B.M., S.J. Cooke and M. Poesch.  2015.  Finding the path to a successful graduate and research career: Advice for early career researchers.  Fisheries.  40:399-403.

Chapman, J.M., D. Algera, M. Dick, E.E. Hawkins, M.J. Lawrence, R.J. Lennox, A.M. Rous, C.M. Souliere, H.L.J. Stemberger, D.P. Struthers, M. Vu, T.D. Ward, A.J. Zolderdo and S.J. Cooke. 2015. Being relevant: Practical guidance for early career researchers interested in solving conservation problems. Global Ecology and Conservation. 4: 334-348.

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Thiem, J.D.,  J.W. Dawson, A.C. Gleiss, E.G. Martins, A. Haro, T. Castro-Santos, A.J. Danylchuk, R.P. Wilson and S.J. Cooke.  2015.  Accelerometer-derived activity correlates with volitional swimming speed in lake sturgeon (Acipenser fulvescens).  Canadian Journal of Zoology. 93:645-654.

Transactions of the American Fisheries Society

Rous, A.M., A. Forrest, E. Hart McKittrick, G. Letterio, J. Roszell, T. Wright, and S.J. Cooke. 2015. Orientation and position of fish affects recovery time from electrosedation. Transactions of the American Fisheries Society 144: 820-828.

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Philipp, D.P., J.E. Claussen, J.B. Koppelman, J.A. Stein, S.J. Cooke, C.D. Suski, D.H. Wahl, D.A. Sutter, R. Arlinghaus. 2015. Fisheries-Induced Evolution in Largemouth Bass: Linking Vulnerability to Angling, Parental Care, and Fitness. American Fisheries Society Symposium 82: 223-234.

Hussey, N.E., S.T. Kessel, K. Aarestrup, S.J. Cooke, P.D. Cowley, A.T. Fisk, R.G. Harcourt, K.N. Holland, S.J. Iverson, J.F. Kocik, J.E. Mills Flemming and F.G. Whoriskey.  In Press.  Aquatic animal telemetry: a panoramic window into the underwater world. Science DOI: 10.1126/science.1255642

Transactions of the American Fisheries Society

Robinson, K.A., S.G. Hinch, G.D. Raby, M.R. Donaldson, D. Robichaud, D.A. Patterson, and S.J. Cooke. 2015. Influence of post-capture ventilation assistance on migration success of adult sockeye salmon following capture and release. Transactions of the American Fisheries Society 144: 693-704.

Raby, G.D., T.D. Clark, A.P. Farrell, D.A. Patterson, N.N. Bett, S.M. Wilson, W.G. Willmore, Cory D. Suski, S.G. Hinch and S.J. Cooke.   2015.  Facing the river gauntlet: understanding the effects of fisheries capture and water temperature on the physiology of coho salmon.  PLoS One 10:e0124023.

Chapman, J.M., D.J. Marcogliese, C.D. Suski, and S.J. Cooke. 2015. Variation in parasite communities and health indices of juvenile Lepomis gibbosus across a gradient of watershed land-use and habitat quality. Ecological Indicators doi:10.1016/j.ecolind.2015.05.013

Raby, G.D., S.M. Wilson, D.A. Patterson, S.G. Hinch, T.D. Clark, A.P. Farrell, and S.J. Cooke. 2015. A physiological comparison of three techniques for reviving sockeye salmon exposed to a severe capture stressor during upriver migration. Conservation Physiology doi:10.1093/conphys/cov015

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Binder, T.R., C.M. O’Connor, S.H. McConnachie, S.M. Wilson, M.A. Nannini, D.H. Wahl and S.J. Cooke.  2015.  Is winter worse for stressed fish?  The consequences of exogenous cortisol manipulation on over-winter survival and condition of juvenile largemouth bass.  Comparative Biochemistry and Physiology A 187: 97-102.

 

Transactions of the American Fisheries Society

Lennox, R. J., Uglem, I., Cooke, S. J., Næsje, T., Whoriskey, F. G., Havn, T. B., Ulvan, E. M., Solem, Ø., Thorstad, E. B. 2015. Does catch-and-release angling alter the behavior and fate of adult Altantic Salmon during upriver migration?  Transactions of the American Fisheries Society. 144:2, 400-409.

Cooke, S.J., and J.C. Vermaire.  2015.  Environmental studies and environmental science today: inevitable mission creep and integration in action-oriented transdisciplinary areas of inquiry, training and practice.  Journal of Environmental Studies and Sciences.  5:70-78.

Cull, F., C.M. O’Connor, C.D. Suski, A.D. Shultz, A.J. Danylchuk and S.J. Cooke.  2015.  Puff and bite: The relationship between the glucocorticoid stress response and anti-predator performance in checkered puffer (Sphoeroides testudineus).  General and Comparative Endocrinology  214:1-8.

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Pleizier, N., L.F.G. Gutowsky, V.M. Peddemors, S.J. Cooke and P.A. Butcher.  2015.  Variation in whole-, landed- and trimmed-carcass and fin-weight ratios for various sharks captured on demersal set-lines off eastern Australia.  Fisheries Research. 167:190-198.

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Taylor, J.J., S.M. Wilson, N.M. Sopinka, S.G. Hinch, D.A. Patterson, S.J. Cooke and W.G. Willmore.  2015.  Are there intergenerational and population-specific effects of oxidative stress in sockeye salmon (Oncorhynchus nerka)?  Comparative Biochemistry and Physiology A. 184:97-104.

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Cooke, S.J., and K.J. Murchie. 2015. Status of aboriginal, commercial and recreational inland fisheries in North America: past, present and future. Fisheries Management and Ecology 22: 1-111.

Gallagher, A.J., N. Hammerschlag, S.J. Cooke, D.P. Costa, and D.J. Irschick. 2015. Evolutionary theory as a tool for predicting extinction risk. Trends in Ecology and Evolution 30:61-65.

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Lennox, R. J., K. Whoriskey, G. T. Crossin,  and S. J. Cooke. 2015. Influence of angler hook-set behaviour relative to hook type on capture success and incidences of deep hooking and injury in a teleost fish. Fisheries Research 164: 201-205.

Shiffman, D.S., A.J. Gallagher, J. Wester, C.C. Macdonald, A.D. Thaler, S.J. Cooke, and N. Hammerschlag. 2015. A letter of clarification from the authors of “trophy fishing for species threatened with extinction”. Marine Policy 53: 213-214.

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Tuor, K.M.F., K.E. Smokorowski and S.J. Cooke.  2015 The influence of fluctuating ramping rates on the diets of small-bodied fish species of boreal rivers.  Environmental Biology of Fishes 98:345-355.

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Cull, F., C.D. Suski, A. Shultz, A.J. Danylchuk, C.M. O’Connor, K.J.  Murchie and S.J. Cooke.  2015.  Consequences of experimental cortisol manipulations on the thermal biology of the checkered puffer (Sphoeroides testudineus) in laboratory and field environments.  Journal of Thermal Biology 47:63-74.

2014

Hammerschlag, N., S.J. Cooke, A.J. Gallagher and B.J. Godley.  2014.  Considering the fate of electronic tags: user responsibility and interactions with stakeholders and other scientists when encountering tagged aquatic animals.  Methods in Ecology and Evolution 11:1147-1153. 

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Cooke, S.J.  2014.  Making way for migratory fish.  Book review of Running Silver: Restoring Atlantic Rivers and Their Great Fish Migrations. John Waldman. Lyons Press.  BioScience 64:1053-1054.

Physiological and Biochemical Zoology

Burnett, N.J., S.G. Hinch, D.C. Braun, M.T. Casselman, C.T. Middleton, S.M Wilson, and S.J. Cooke. 2014. Burst swimming in areas of high flow: delayed consequences of anaerobiosis in wild adult sockeye salmon. Physiological and Biochemical Zoology 87:587-598.

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Samson, E., J.W. Brownscombe and S.J. Cooke. 2014.  Behavioural and reflex responses of mottled mojarra Eucinostomus lefroyi (Gerreidae) to cold shock exposure.  Aquatic Biology. 23: 101-108.

 

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Hayden, T.A., C.M. Holbrook, D. Fielder, C.S. Vandergoot, R.A. Bergstedt,  J.M. Dettmers, C.C. Krueger and S.J. Cooke.  2014.  Acoustic telemetry reveals large-scale migration patterns for walleye in Lake Huron.  PLoS One DOI:10.1371/journal.pone.0114833

Brownscombe, J.W., K. Marchand, K. Tisshaw, V. Fewster, O. Groff, M. Pichette, M. Seed,  L.F.G. Gutowsky, A.D.M. Wilson and S.J. Cooke. 2014. The influence of water temperature and accelerometer-determined fight intensity on physiological stress and reflex impairment of angled largemouth bass. Conservation Physiology DOI: 10.1093/conphys/cou057

 

Donaldson, M.R., S.G. Hinch, C.D. Suski, A.T. Fisk, M.R. Heupel and S.J. Cooke.  2014.  Making connections in aquatic ecosystems with acoustic telemetry monitoring.  Frontiers in Ecology and Environment 12: 565–573.

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Stein, J.A., J.E. Claussen, S.J. Cooke and D.P. Philipp. 2014.  Not all biases are created equal:  A comment on Snorkel survey bias observed by Hessenauer et al. 2014.  North American Journal of Fisheries Management 34:1204-1206.

Finn, J.T., J.W. Brownscombe, C.R. Haak, S.J. Cooke, R. Cormier, T. Gagne, and A.J. Danylchuk.  2014 Applying network methods to acoustic telemetry data: modeling the movements of tropical marine fishes. Ecological Modelling 293: 139-149.

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Schwabe, M., T. Meinelt, T.M. Phan, S.J. Cooke and R. Arlinghaus. 2014.  Absence of handling-induced Saprolegnian infection in juvenile Rainbow Trout Oncorhynchus mykiss, with implications for catch-and-release angling.  North American Journal of Fisheries Management 34:1221-1226.

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Halliday, W.D., J.E. Paterson, L.D. Patterson, S.J. Cooke and G. Blouin-Demers.  2014.  Testosterone, body size, and sexual signals predict parasite load in Yarrow’s spiny lizards (Sceloporus jarrovii).  Canadian Journal of Zoology  92: 1075-1082.

Cooke, S.J., M.R. Donaldson, and T.D. Clark. 2014. Practical guidance for early career researchers dealing with tardy or unresponsive co-authors. Ideas in Evolution and Ecology 7: 73-76.

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Cooke, S.J., R. Arlinghaus, D. M. Bartley, T.D. Beard, I.G. Cowx, T.E. Essington, O.P. Jensen, A. Lynch, W.W. Taylor, and R. Watson.  2014.  Where the waters meet: Sharing ideas and experiences between inland and marine realms to promote sustainable fisheries management.  Canadian Journal of Fisheries and Aquatic Sciences  71: 1593-1601.  (Invited paper arising from S. Cooke’s J.C. Stevenson Lectureship at CCFFR in Windsor in 2013)

Raby, G.D., M.R. Donaldson, V.M. Nguyen, M.K. Taylor, N.M. Sopinka, K.V. Cook, D.A. Patterson, D. Robichaud, S.G. Hinch, and S.J. Cooke. 2014. Bycatch mortality of endangered coho salmon: impacts, solutions, and aboriginal perspectives. Ecological Applications 24: 1803-1819.

Coristine, L.E., C.M. Robillard, J.T. Kerr, C.M. O’Connor, D. Lapointe and S.J. Cooke.  2014.  A conceptual framework for the emerging discipline of conservation physiology.  Conservation Physiology DOI: 10.1093/conphys/cou033

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Martins, E.G., L.F.G. Gutowsky, P.M Harrison, J.E. Mills Flemming, I.D. Jonsen, D.Z. Zhu, A. Leake, D.A. Patterson, M. Power and S.J. Cooke.  2014.  Behavioral attributes of turbine entrainment risk for adult resident fish revealed by acoustic telemetry and state-space modeling.  Journal of Animal Biotelemetry  2: 13.

Miller, K.M., A. Teffer, S. Tucker, S. Li, A.D. Schulze, M. Trudel, F. Juanes,  A. Tabata,  K.H. Kaukinen, N.G. Ginther, T.J. Ming, S.J. Cooke, M. Hipfner, D.A. Patterson, and S.G. Hinch.  2014.  Infectious disease, shifting climates and opportunistic predators: cumulative factors potentially impacting wild salmon declines.  Evolutionary Applications  7: 812-855.

 

Bower, S.D., Nguyen, V.M., Danylchuk, A.J., Beard Jr., T.D., and S.J. Cooke. 2014. Inter-sectoral conflict and recreational fisheries of the developing world: Opportunities and challenges for co-operation. InMcConney, P., R. Medeiros and M. Pena. Eds. 2014. Enhancing Stewardship in Small-Scale Fisheries: Practices and Perspectives. Too Big To Ignore (TBTI) and Centre for Resource Management and Environmental Studies, The University of the West Indies, Cave Hill Campus, Barbados. CERMES Technical Report No. 73.

Taylor, M.K., C.T. Hasler, S.G. Hinch, B. Lewis, D.C. Schmidt and S.J. Cooke.  2014.  Reach-scale movements of bull trout (Salvelinus confluentus) relative to hydropeaking operations in the Columbia River, Canada. Ecohydrology  7: 1079-1086.

Burnett, N.J., S.G. Hinch, M.R. Donaldson, N.B. Furey, D.A. Patterson, D.W. Roscoe, and S.J. Cooke. 2014Alterations to dam-spill discharge influence sex-specific activity, behaviour and passage success of migrating adult sockeye salmon. Ecohydrology 7: 1094-1104.

Shiffman, D.S., A.J. Gallagher, J. Wester, C. Macdonald, A.D. Thaler, S.J. Cooke and N. Hammerschlag.  2014.  Trophy fishing for species threatened with extinction: a way forward  building on a history of conservation.  Marine Policy  50: 318-322.

Gale, M.K., S.G. Hinch, S.J. Cooke, M.R. Donaldson, E.J. Eliason, K.M. Jeffries, E.G. Martins and D.A. Patterson.  2014.  Observable impairments predict mortality of captured and released sockeye salmon at various temperatures.  Conservation Physiology DOI: 10.1093/conphys/cou029