Publications

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In Press

Birnie-Gauvin, K., M.H. Larsen, K. Aarestrup, W.G. Willmore and S.J. Cooke. In Press. N-acetylcysteine manipulation fails to elicit an increase in glutathione in a teleost model. Fish Physiology and Biochemistry.  00:000-000.

Xia, J., M. Cheng, R. Cai, S. Fu, S.J. Cooke and C.K. Elvidge.  In Press.  Ontogenetic changes in chemical alarm cue recognition and fast-start performance in guppies (Poecilia reticulata).  Ethology. 00:000-000.

Redfern, J.C., S.J. Cooke, R.J. Lennox, M.A. Nannini, D.H. Wahl and Kathleen M. Gilmour.  In Press.  Effects of maternal cortisol treatment on offspring size, responses to stress, and anxiety related behavior in wild largemouth bass (Micropterus salmoides).  Physiology and Behavior.  00:000-000

environmental biology of fishes cover image

Shipley, O.N., J.W. Brownscombe, A.J. Danylchuk, S.J. Cooke, O.R. O’Shea and E.J. Brooks.  In Press.  Fine-scale movement and activity patterns of Caribbean reef sharks (Carcharhinus perezi) in The Bahamas.  Environmental Biology of Fishes.  00:000-000.

environmental biology of fishes cover image

Struthers, D.P., L.F.G. Gutowsky, E.C. Enders, K.E. Smokorowski, D.A. Watkinson, A.T. Silva, M. Cvetkovic, E. Bibeau and S.J. Cooke.  In Press.  Factors influencing the spatial ecology of Lake Sturgeon and Walleye within an impounded reach of the Winnipeg River.  Environmental Biology of Fishes.  00:000-000.

Transactions of the American Fisheries Society

Midwood, J.D., D. Reddick, J. Brooks, C. Boston, S.E. Doka and S.J. Cooke.  In Press. Intracoelomic implantation in Longnose gar (Lepisosteus osseus).  Transactions of the American Fisheries Society.  00:000-000.

Peiman, K.S., K. Birnie-Gauvin, M.H. Larsen, S.F. Colborne, K.M. Gilmour, K. Aarestrup, W.G. Willmore and S.J. Cooke. In Press.  Morphological, physiological and dietary covariation in migratory and resident adult brown trout (Salmo trutta). Zoology.  00:000-000.

Lawrence, M.J., E.J. Eliason, J.W. Brownscombe, K.M. Gilmour, J.W. Mandelman, L.F.G. Gutowsky and S.J. Cooke.  In Press.  Influence of supraphysiological cortisol manipulation on predator avoidance behaviours and physiological responses to a predation threat in a wild marine teleost fish.  Integrative Zoology.  00:000-000.

River Research and Applications Image

Ford, M.I., C.K. Elvidge, D. Baker, T.C.  Pratt, K.E. Smokorowski, P. Patrick, M. Sills and S.J. Cooke.  In Press.  Evaluating a light-louver system for behavioural guidance of age-0 white sturgeon.  River Research and Applications.  00:000-000.

BioScience Cover Image

Lennox RJ, Aarestrup K, Cooke SJ, Cowley PD, Deng ZD, Fisk AT, Harcourt RG, Heupel M, Hinch SG, Holland KN, Hussey NE, Iverson SJ, Kessel ST, Kocik JF, Lucas MC, Mills Flemming J, Nguyen VM, Stokesbury MJW, Vagle S, VanderZwaag DL, Whoriskey FG, Young N. In Press. Envisioning the future of aquatic animal tracking: Technology, science, and application. BioScience 00:00-00.

Cooke, S.J., K. Birnie-Gauvin, R.J. Lennox, J.J. Taylor, T. Rytwinski, J.L. Rummer, C.E. Franklin, J.R. Bennett and N.R. Haddaway.  In Press.  How experimental biology and ecology can support evidence-based decision-making in conservation: Avoiding pitfalls and enabling application.  Conservation Physiology  00:000-000

Cook, K.V., S.G. Hinch, S.M. Drenner, E.A. Halfyard, G.D. Raby and S.J. Cooke.  In Press.  Population-specific mortality in coho salmon (Oncorhynchus kisutch) released from a purse seine fishery.  ICES Journal of Marine Science. 00:000-000

Lennox, R.J., T.B. Havn, E.B. Thorstad, E. Liberg, S.J. Cooke and I. Uglem. In Press. Behaviour and survival of wild Atlantic salmon (Salmo salar) captured and released while surveillance angling for escaped farmed salmon. Aquaculture Environment Interactions. 00:000-000.

Animal Biotelemetry Logo

Schoonyan, A., R.T. Kraus, M.D. Faust, A. Cook, C.S. Vandergoot, C.C. Krueger and S.J. Cooke.  In Press.  Estimating Incision Healing Rate for Surgically Implanted Acoustic Transmitters from Recaptured Adult walleye (Sander vitreus). Animal Biotelemetry.  00:000-000

River Research and Applications Image

Landsman, S.J., A.D.M. Wilson, S.J. Cooke and M.R. van den Heuvel.  In Press.  Fishway passage success for migratory rainbow smelt Osmerus mordax is not dictated by behavioural type.  River Research and Applications.  00:000-000.

environmental biology of fishes cover image

Gutowsky, L.F.G., Harrison, P.M., Martins, E.G., Leake, A., Patterson, D.A., Zhu, D.Z., Power, M., Cooke, S.J. In Press. Daily temperature experience and selection by adfluvial bull trout (Salvelinus confluentus).  Environmental Biology of Fishes. 00:000-000.

Journal of Experimental Marine Biology and Ecology Cover Image

Hammerschlag, N., L.F.G. Gutowsky, A.J. Gallagher, P. Matich and S.J. Cooke.  In Press.  Diel habitat use patterns of a marine apex predator (tiger shark, Galeocerdo cuvier) at a high use area exposed to dive tourism.  Journal of Experimental Marine Biology and Ecology.  00:000-000

north american journal of fisheries management cover image

Lennox RJ, Filous A, Danylchuk SC, Cooke SJ, Brownscombe JW, Friedlander AM, Danylchuk AJ. In Press. Factors influencing post-release predation for a catch-and-release tropical flats fishery with a high predator burden. North American Journal of Fisheries Management 00: 00-00

Diggles, B.K., Arlinghaus, R., Browman, H. I., Cooke, S. J., Cowx, I. G., Kasumyan, A. O., Key, B., Rose, J. D., Sawynok, W., Schwab, A., Skiftesvik, A. B., Stevens, E. D., Watson, C. A. and Wynne, C. D. L.  In Press.  Responses of larval zebrafish to low pH immersion assay generate multiple interpretations, questions and problems. Comment on Lopez-Luna et al. (2017).  Journal of Experimental Biology.  00:000-000.

Madliger, C.L., S.J. Cooke and O.P. Love.  In Press.  A call for more physiology at conservation conferences.  Biodiversity and Conservation.  00:000-000.

Brownscombe, J.W., S.J. Cooke, D.A. Algera, K.C. Hanson, E.J. Eliason, N.J. Burnett, A.J. Danylchuk, S.G. Hinch, and A.P. Farrell.  In Press.  Ecology of exercise in wild fish: integrating concepts of individual physiological capacity, behaviour and fitness through diverse case studies. Integrative and Comparative Biology. 00:000-000.

American Fisheries Society Logo

Gallagher, A.J., P. Szekeres, S.J. Cooke, and J.M. Farrell.  In Press. Tracking young-of-year northern pike and muskellunge: monitoring behavior and habitat use during fall outmigration from nursery sites. American Fisheries Society Symposium 00:000-000.

Fish and Fisheries

Lennox RJ, Alós J, Arlinghaus A, Horodysky A, Klefoth T, Monk CT, Cooke SJ. In Press . What makes fish vulnerable to capture by hooks? A conceptual framework and a review of key determinants. Fish and Fisheries 01-27. DOI: 10.1111/faf.12219.

Ecology of Freshwater Fish Cover Image

Hayden, T.A., T.R. Binder, C.M. Holbrook, C.S. Vandergoot, D.G. Fielder, S.J. Cooke, J.M. Dettmers and C.C. Krueger.  In Press.  Spawning site fidelity and apparent annual survival of walleye (Sander vitreus) differs between a Lake Huron and Lake Erie tributary.  Ecology of Freshwater Fish.  00:000-000.

Fish and Fisheries

Birnie-Gauvin, K., D. Costantini, S.J. Cooke, and W.G Willmore. In Press. A comparative and evolutionary approach to oxidative stress in fish: a review. Fish and Fisheries. 00:000-000.

Cooke, S.J., V.M. Nguyen, S.T. Kessel, N.E. Hussey, N. Young and A.T. Ford.  In Press.  Troubling and unanticipated issues at the frontier of animal tracking for conservation and management.  Conservation Biology.  00:000-000.

2017

Nguyen, V.M.Young, M., Hinch, S.G., Cooke, S.J. 2016. Getting past the blame game: convergence and divergence in perceived threats to salmon resources among anglers and indigenous fishers in Canada’s lower Fraser River. AMBIODOI 10.1007/s13280-016-0769-6. 

Cooke, S.J., S. Johansson, K. Andersson, B. Livoreil, G. Post, R. Richards, R. Stewart and A.S. Pullin. 2017. Better evidence, better decisions, better environment: Emergent themes from the first environmental evidence conference. Environmental Evidence. 6:15. https://doi.org/10.1186/s13750-017-0092-0

Elmer, L.K., C.M. O’Connor, D.P. Philipp, G. Van Der Kraak, K.M. Gilmour, W.G. Willmore, B.L. Barthel and S.J. Cooke. 2017.  Oxidative ecology of paternal care in wild smallmouth bass, Micropterus dolomieu.  Journal of Experimental Biology. 220:1905-1914.

Midwood JD, Peiman KS, Burt AEW, Sarker MY, Nannini MA, Wahl DH, and Cooke SJ. 2017. Size-dependent consequences of exogenous cortisol manipulation on overwinter survival and condition of largemouth bass. Journal of Experimental Zoology Part A. 327:5-17.

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Nguyen V.M., Brooks, J.L., Young, N., Lennox, R., Haddaway, N., Whoriskey, F., Harcourt, R., Cooke, S.J.  2017.  To share or not to share in the emerging era of big data: Perspectives from fish telemetry researchers on data sharing.  Canadian Journal of Fisheries and Aquatic Sciences.  74:1260-1274.

Cairns, N.A., L.J. Stoot, G. Blouin-Demers and S.J. Cooke. 2017. Using behavioral observations to develop escape devices for freshwater turtles entrapped in fishing nets.  Journal of Fish and Wildlife Management. 8:4-14.

Rytwinski T, Taylor JJ, Bennett JR, Smokorowski, KE, Cooke SJ. 2017. What are the impacts of flow regime changes on fish productivity in temperate regions? A systematic map protocol. Environmental Evidence. 6:13. DOI 10.1186/s13750-017-0093-z

Reviews in Fish Biology and Fisheries Cover Image

Paukert, C.P., A.J. Lynch, T.D. Beard, Y. Chen, S.J. Cooke, M.S. Cooperman, I.G. Cowx, L. Ibengwe, D.M. Infante, B.J.E. Myers, N. Phú Hòa, and I.J. Winfield. 2017.  Designing a global assessment of climate change on inland fishes and fisheries: knowns and needs.  Reviews in Fish Biology and Fisheries.  DOI 10.1007/s11160-017-9477-y

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Cooke, E.L.L., A.D.M. Wilson, C.K. Elvidge and S.J. Cooke.  2017.  Does capture method or the presence of aquatic protected areas influence the selective harvest of behavioural types in largemouth bass?  Canadian Journal of Fisheries and Aquatic Sciences.  00:000-000 dx.doi.org/10.1139/cjfas-2016-0192

Patterson, D.A., Robinson, K.A., Raby, G.D., Bass, A.L., Houtman, R., Hinch, S.G., and Cooke, S.J. 2017. Guidance to Derive and Update Fishing-Related Incidental Mortality Rates for Pacific Salmon. DFO Can. Sci. Advis. Sec. Res. Doc. 2017/011. vii + 56 p.

Ogburn, M.B., A-L. Harrison, F. Whoriskey, S.J. Cooke, J.E. Mills-Flemming and L.G. Torres. 2017.  Addressing challenges in the application of animal movement ecology to aquatic conservation and management.  Frontiers in Marine Science. 04:70 doi: 10.3389/fmars.2017.00070

Birnie-Gauvin, K., K.S. Peiman, M.H. Larsen, K. Aarestrup, W.G. Willmore and S.J. Cooke. 2017.  Short-term and long-term effects of transient exogenous cortisol manipulation on oxidative stress in juvenile brown trout.  Journal of Experimental Biology. 220: 1693-1700.

Comparative Biochemistry and Physiology Cover Image

Lawrence, M.J., E.J. Eliason, J.W. Brownscombe, K.M. Gilmour, J.W. Mandelman and S.J. Cooke. 2017. An experimental evaluation of the role of the stress axis in mediating predator-prey interactions in wild marine fish. Comparative Physiology and Biochemistry A. 207: 21-29.

Lennox RJ, Cooke SJ, Davis CR, Gargan P, Hawkins LA, Havn TB, Johansen MR, Kennedy R, Richard A, Svenning M-A, Uglem I, Webb J, Whoriskey FG, Thorstad EB. 2017. Pan-Holarctic assessment of post-release mortality of angled Atlantic salmon Salmo salar. Biological Conservation 209: 150-158

Struthers, D.P., L.F.G. Gutowsky, E. Enders, K. Smokorowski, D. Watkinson, E. Bibeau and S.J. Cooke. 2017.  Evaluating riverine hydrokinetic turbine operations relative to the spatial ecology of wild fishes. Journal of Ecohydraulics. 2:53-67.

Costa, M.J., R.J. Lennox, C. Katopodis and S.J. Cooke. 2017.  Is there evidence for flow variability as an organism level stressor in fluvial fish?  Journal of Ecohydraulics. 2:68-83.

Messmer, V., M.S. Pratchett, A.S. Hoey, A.J. Tobin, D.J. Coker, S.J. Cooke and T.D. Clark. 2017. Global warming will disproportionately affect larger adults in a predatory coral reef fish. Global Change Biology. 23: 2230–2240.

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Twardek, W.M., A.D. Shultz, J.E. Claussen, S.J. Cooke, J.A. Stein, J.B. Koppelman, F.J.S. Phelan and D.P. Philipp. 2017. Potential consequences of angling on nest-site fidelity in largemouth bass. Environmental Biology of Fishes. 100: 611-617.

Bulletin of Marine Science Cover Image

Bower, S.D., H. Kooner, H. Ludwig, S. Lumb, J. Raina, J. Webb, Z. Zrini, C.M. O’Connor and S.J. Cooke. 2017.  Diel patterns of hooking depth for active and passive angling methods for two freshwater teleost fishes.  Bulletin of Marine Science.  93:507-517.

Bulletin of Marine Science Cover Image

Hammerschlag, N., C. Meyer, M. Grace, S. Kessell, T. Sutton, E.S. Harvey, C. Paris, D.W. Kerstetter and S.J. Cooke.  2017. Shining a light on fish at night: An overview of patterns and processes operating in fish and fisheries at night and in the perpetual darkness of deep and polar seas. Bulletin of Marine Science. 93:253-284.

aquatic conservation cover image

Jain-Schlaepfer, S.M.R., G. Blouin-Demers, S.J. Cooke and G. Bulté. 2017. Do boating and basking mix? The effect of basking disturbances by motorboats on the body temperature and energy budget of the northern map turtle. Aquatic Conservation. 27: 547-558.

Canadian Journal of Zoology Cover Image

Belanger, C.B., Peiman, K.S., Vera-Chang, M.N., Moon, T.W., and Cooke, S.J.  2017.  Pumpkinseed sunfish (Lepomis gibbosus) from littoral and limnetic habitats differ in stress responsiveness independent of environmental complexity and presence of conspecifics. Canadian Journal of Zoology  95: 193-202.

Pinder, A.C., R. Velterop, S.J. Cooke, and J.R. Britton.  2017.  Consequences of catch-and-release angling for black bream Spondyliosoma cantharus, during the parental care period: implications for management.  ICES Journal of Marine Science.  74:1-7.

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Gallagher, A.J., E.R. Staaterman, S.J. Cooke, N. Hammerschlag. In Press. Behavioural responses to fisheries capture among sharks caught using experimental fishery gear. Canadian Journal of Fisheries and Aquatic Sciences. 74:1-7.

Ecology of Freshwater Fish Cover Image

Wilson, A.D.M., T. Hayden, C.S. Vandergoot, R.T. Kraus, J.M. Dettmers, S.J. Cooke and C.C. Krueger. 2017.  Do intracoelomic telemetry transmitters alter the post-release behaviour of migratory fish?  Ecology of Freshwater Fish. 26: 292–300.

Teffer, A.K., S.G. Hinch, K.M. Miller, D.A. Patterson, A.P. Farrell, S.J. Cooke, A.L. Bass, P. Szekeres and F. Juanes.  2017.  Capture severity, infectious disease processes and sex influence post-release mortality of sockeye salmon bycatch.  Conservation Physiology.  10.1093/conphys/cox017

Fisheries Cover Image

Lynch, A. J., S.J. Cooke, T. D. Beard, Jr., Y.-C. Kao, K. Lorenzen, A. M. Song, M. S. Allen, Z. Basher, D. B. Bunnell, E. V. Camp, I. G. Cowx, J. A. Freedman, V. M. Nguyen, J. K. Nohner, M. W. Rogers, Z. A. Siders, W. W. Taylor, and S-J. Youn. 2017. Grand challenges in the management and conservation of North American inland fish and fisheries. Fisheries. 42:2, 115-124.

Fisheries Research Cover Image

Gagne, T.O., K.L. Ovitz, L.P. Griffin, J.W. Brownscombe, S.J. Cooke, and A.J. Danylchuk. 2017. Evaluating the consequences of catch-and-release recreational angling on golden dorado (Salminus brasiliensis) in Salta, Argentina. Fisheries Research.

BioScience Cover Image

Ford, A.T., S.J. Cooke, J.R. Goheen, and T.P. Young. 2017. Conserving megafauna or sacrificing biodiversity? A response to Ripple et al. BioScience. 00:000-000

River Research and Applications Image

Burnett, N.J., S.G. Hinch, N.N. Bett, D.C. Braun, M.T. Casselman, S.J. Cooke, A. Gelchu, S. Lingard, C.T. Middleton, V. Minke-Martin, and C.F.H. White. 2017. Reducing carryover effects on migration and spawning success of salmon through a management experiment of dam flows. River Research and Applications.  33:3-15.

Fisheries Research Cover Image

Brownscombe, J.W., T.P. Parma, J. Almeida, E. Giesbrecht. J. Batson, X. Chen, S. Wesch, T.D. Ward, C. O’Connor, and S.J. Cooke. 2017. The efficacy of assisted ventilation techniques for facilitating the recovery of fish that are exhausted from simulated angling stress. Fisheries Research.

Fisheries Research Cover Image

Bower, S.D., A.J. Danylchuk, R. Raghavan, S. Clark Danylchuk, A.C. Pinder, A.M. Alter, and S.J. Cooke. 2017. Involving recreational fisheries stakeholders in development of research and conservation priorities for mahseer (Tor spp.) of India through collaborative workshops. Fisheries Research. 186:665-681.

Fisheries Research Cover Image

Cooke, S.J., L.Y. Palensky, and A.J. Danylchuk. 2017. Inserting the angler into catch-and-release angling science and practice. Fisheries Research. 186:599-600.

Bower, S.D., Raghavan, R., Mahesh, N., Danylchuk A.J., Cooke, S.J.  Inter-sectoral fisheries governance issues and solutions on the Cauvery River, India. In: A.M. Song, S.D. Bower, P. Onyango, S.J. Cooke, R. Chuenpagdee (Eds.), Inter-Sectoral Governance of Inland Fisheries. TBTI Publication Series, St John’s, NL, Canada.

Fisheries Research Cover Image

Danylchuk, A.J., J. Tiedemann, and S.J. Cooke. 2017. Perceptions of recreational fisheries conservation within the fishing industry: knowledge gaps and learning opportunities identified at east coast trade shows in the United States.  Fisheries Research. 186:681-687.

Physiological and Biochemical Zoology

Algera, D.A., L.F.G. Gutowsky, A.J. Zolderdo and S.J. Cooke.  2017. Parental Care in a Stressful World: Experimentally Elevated Cortisol and Brood Size Manipulation Influence Nest Success Probability and Nest-Tending Behavior in a Wild Teleost Fish Physiological and Biochemical Zoology.  90(1):85–95.

Barkley, A.N., S.J. Cooke, A.T. Fisk, K. Hedges and N.E. Hussey.  2017.  Capture-induced  stress in deep-water Arctic fish.  Polar Biology. 40:213–220.

Cooke, S.J., K.R. Hultine, J.L. Rummer and C.E. Franklin.  2017.  Reflections and progress in conservation physiology.  Conservation Physiology.  05:1-3.

Comparative Biochemistry and Physiology Cover Image

Magel,  J.M.T., N. Pleizier, A.D.M. Wilson, A.D. Shultz, M.N. Vera-Chang, T.W. Moon and S.J. Cooke. 2017.  Do physical habitat complexity and predator cues influence the baseline and stress-induced glucocorticoid levels of a mangrove-associated fish?  Comparative Biochemistry and Physiology A. 203:281-287.

Xia, J., Y. Ma, C. Fu, S. FuIn and S.J. Cooke. 2017. Effects of temperature acclimation on the critical thermal limits and swimming performance of Brachymystax lenok tsinlingensis: a threatened fish in Qinling Mountain region of China.  Ecological Research. 32:61-70.

Journal of Experimental Marine Biology and Ecology Cover Image

Bouyoucos, I.A., D.W. Montgomery, J.W. Brownscombe, S.J. Cooke, C.D. Suski, J.W. Mandelman and E.J. Brooks. 2017. Swimming speeds and metabolic rates of semi-captive juvenile lemon sharks (Negaprion brevirostris, Poey) estimated with acceleration biologgers. Journal of Experimental Marine Biology and Ecology. 486:245-254.

Fisheries Research Cover Image

Kerr SM, Ward TD, Lennox RJ, Brownscombe JW, Chapman JM, Gutowsky LFG, Logan JM, Twardek WM, Elvidge CK, Danylchuk AJ, Cooke SJ. 2017. Influence of hook type and live bait on the hooking performance of inline spinners in the context of catch-and-release brook trout Salvelinus fontinalis fishing in lakes. Fisheries Research 186:642-647.

2016

McLean, M.F., Hanson, K.C., Cooke, S,J., Hinch, S.G., Patterson, D.A., Nettles, T.L., Litvak, M.K., Crossin, G.T. 2016. Physiological stress response, reflex impairment, and delayed mortality of white sturgeon Acipenser transmontanus exposed to simulated fisheries stressors. Conservation Physiology 4: cow031

Sopinka, N.M., M.R. Donaldson, C.M. O’Connor, C.D. Suski and S.J. Cooke.  2016.  Stress indicators in fish.  Pages 406-436 in Fish Physiology, Vol. 35, Biology of Stress in Fish (eds. C.B. Schreck, L. Tort, A.P. Farrell and C.J. Brauner), Academic Press, Amsterdam.

Harvey-Lavoie, S., S.J. Cooke, G. Guénard and D. Boisclair. 2016. Differences in movements of northern pike inhabiting rivers with contrasting flow regimes.  Ecohydrology. 9:1687-1699.

Animal Biotelemetry Logo

Hayden, T.A., C.M. Holbrook, T.R. Binder, J.M. Dettmers, S.J. Cooke, C.S. Vandergoot and C.C. Krueger.  2016.  Probability of acoustic transmitter detections by receiver lines in Lake Huron: results of multi-year field tests and simulations.  Journal of Animal Biotelemetry.  04:19.

Eales, J., N.R. Haddaway, C. Bernes, S.J. Cooke, B.G. Jonsson, J. Kouki, and G. Petrokofsky. 2016. What is the effect of prescribed burning in temperate and boreal forest on biodiversity, beyond tree regeneration, pyrophilous and saproxylic species? A systematic review protocol. Environmental Evidence. 05:24.

Journal of Environmental Management Cover Image

Young, N., M. Corriveau, V.M. Nguyen,  S.J. Cooke and S.G. Hinch.  2016.  How do potential knowledge users evaluate new claims about a contested resource? Problems of power and politics in knowledge exchange and mobilization.  Journal of Environmental Management. 184: 380-388.

McKenzie, D.J., M. Axelsson, D. Chabot, G. Claireaux, S.J. Cooke, R.A. Corner, G. De Boeck, P. Domenici, P.M. Guerreiro, B. Hamer, C. Jørgensen, S.S. Killen, S. Lefevre, S. Marras, B. Michaelidis, G.E. Nilsson, M.A. Peck, A. Perez-Ruzafa, A.D. Rijnsdorp, H.A. Shiels, J.F. Steffensen, J.C. Svendsen, M.B.S. Svendsen, L.R. Teal, J. van der Meer, T. Wang, J.M. Wilson, R.W. Wilson and J.D. Metcalfe.  2016. Conservation physiology of marine fishes: State of the art and prospects for policy.  Conservation Physiology. 4:1-20.

Key, B., R. Arlinghaus, H.I. Browman, S.J. Cooke, I.G. Cowx, B.K. Diggles, J.D. Rose, W. Sawynok, A. Schwab, A.B. Skiftesvik, E.D. Stevens and C.A. Watson.  2016.  Problems with equating thermal preference with “emotional fever” and sentience. Comment on Rey et al. (2015) Fish can show emotional fever: stress-induced hyperthermia in zebrafish.  Proceedings of the Royal Society of London B. 00:000-000.

Fisheries Cover Image

Dunmall, K.M., and S.J. Cooke. 2016. Narrow or broad: diverse academic pathways to a career in fisheries science and management. Fisheries. 41:477-478.

Midwood, J.D., M.H. Larsen, K. Aarestrup and S.J. Cooke. 2016. Stress and food deprivation: linking physiological state to migration success in a teleost fish. Journal of Experimental Biology. 219: 3712-3718

Transactions of the American Fisheries Society

Cooke, S.J., C.J.A. Cooke and J.W. Brownscombe. 2016. Ultralight or heavyweight? The interactive effects of gear strength and air exposure on reflex impairment in largemouth bass. Transactions of the American Fisheries Society. 145:6,1202-1207.

Marriner, B.A., A.B.M. Baki, D.Z. Zhu, S.J. Cooke and C. Katopodis. 2016.  The hydraulics of a vertical slot fishway: a case study on the multi-species Vianney-Legendre fishway in Quebec, Canada.  Ecological Engineering.  90:190-202

aquatic conservation cover image

McClellan Press, K., J. Mandelman, E. Burgess, S.J. Cooke, V.M. Nguyen, and A.J. Danylchuk. 2016.  Catching sharks: recreational saltwater angler behaviors and attitudes regarding shark encounters and conservation.  Aquatic Conservation: Marine and Freshwater Ecosystems. 26:689-702.

 

Cooke, S.J., E.H. Allison, T.D. Beard, R. Arlinghaus, A.H. Arthington, D.M. Bartley, I.G. Cowx, C. Fuentevilla, N. J. Leonard, K. Lorenzen, A.J. Lynch, V.M. Nguyen, S.-J. Youn, W.W. Taylor and R.L. Welcomme. 2016.  On the sustainability of inland fisheries: Finding a future for the forgotten.  Ambio. 45:753-764.

Comparative Biochemistry and Physiology Cover Image

Taylor, J.J., N.M. Sopinka, S.M. Wilson, S.G. Hinch, D.A. Patterson, S.J. Cooke and W.G. Willmore. 2016. Examining the relationships between egg cortisol and oxidative stress in developing wild sockeye salmon (Oncorhynchus nerka).  Comparative Biochemistry and Physiology A. 200:87-93.

Fisheries Management and Ecology Cover Image

Bower, S.D., A.J. Danylchuk, R. Raghavan, S. Clark-Danylchuk, A. Pinder, and S.J. Cooke. 2016. Rapid assessment of the physiological impacts caused by catch-and-release angling on blue-finned mahseer (Tor sp.) of the Cauvery River, India. Fisheries Management and Ecology  23:208-217.

Patterson, D.A., S.J. Cooke, S.G. Hinch, K.A. Robinson, N. Young, A.P. Farrell and K.M. Miller. 2016. A perspective on physiological studies supporting the provision of scientific advice for the management of Fraser River sockeye salmon (Oncorhynchus nerka). Conservation Physiology. 4:1

Young, N., Nguyen, V.M., Corriveau, M., Cooke, S.J., Hinch, S.G. 2016. Knowledge users’ perspectives and advice on how to improve knowledge exchange and mobilization in the case of a co-managed fishery, Environmental Science & Policy. 66: 170-178.

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Cooke, S.J. D.M. Bartley, T.D. Beard, I.G. Cowx, C. Goddard, C. Fuentevilla, N. Leonard, A.J. Lynch, K. Lorenzen and W.W. Taylor. 2016. From Ideas to Action: Ten Steps to Responsible Inland Fisheries that Support Livelihoods, Food Security, and Healthy Aquatic Ecosystems.  Pages 343-351 in C. Goddard, N. Leonard, W.W. Taylor and D. Bartley, Eds.  Freshwater, Fish, and the Future: Proceedings of the Global Cross-Sectoral Conference.  American Fisheries Society, Bethesda, MD.

 

 

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Beard T. D., E. H. Allison, D.M. Bartley, I.G. Cowx, , S. J. Cooke, C. Fuentevilla, A.J. Lynch, and W.W. Taylor. 2016.  Inland fish and fisheries:  A call to action.  Pages 1-6 in C. Goddard, N. Leonard, W.W. Taylor and D. Bartley, Eds.  Freshwater, Fish, and the Future: Proceedings of the Global Cross-Sectoral Conference.  American Fisheries Society, Bethesda, MD.

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Cooke, S.J., A.H. Arthington, S.A. Bonar, S.D. Bower, D.B. Bunnell, R.E.M. Entsua-Mensah, S. Funge-Smith, J.D. Koehn, N.P. Lester, K. Lorenzen, S. Nam, R.G. Randall, P. Venturelli and I.G. Cowx.  In Press.  Assessment of inland fisheries: A vision for the future.   Pages 45-62 in C. Goddard, N. Leonard, W.W. Taylor and D. Bartley, Eds.  Freshwater, Fish, and the Future: Proceedings of the Global Cross-Sectoral Conference.  American Fisheries Society, Bethesda, MD.

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Lorenzen, K., I.G. Cowx, R.E.M. Entsua-Mensah, N.P. Lester, J.D. Koehn, R.G. Randall, S. Nam, S.A. Bonar, D.B. Bunnell, P. Venutrelli, S.D. Bower and S.J. Cooke. 2016. Stock assessment in inland fisheries: a foundation for sustainable use and conservation. Reviews in Fish Biology and Fisheries. 26:405–440.

Gupta, N., S.D. Bower, S.J. Cooke, A.J. Danylchuk and R. Raghavan. 2016. Practices and attitudes of Indian catch-and-release anglers: identifying opportunities for advancing the management of recreational fisheries. Journal of Threatened Taxa. 8(4): 8659–8665.

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Arlinghaus, R., S.J. Cooke, S.G. Sutton, A.J. Danylchuk, K. De. M. F. Freire, J. Alos, E.T. Da Silva, I.G. Cowx and R. Van Anrooy. 2016. Recommendations for the future of recreational fisheries to prepare the social-ecological system for coping with change. Fisheries Management and Ecology.23; 177–186

Thiem, J.D., J.W. Dawson, D. Hatin, A.J. Danylchuk, P. Dumont, A.C. Gleiss, R.P. Wilson and S.J. Cooke. 2016. Swimming activity and energetic costs of adult lake sturgeon during fishway passage. Journal of Experimental Biology. 219; 2534-2544.

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Nguyen, V.M., A.J. Lynch, N. Young, I.G. Cowx, T.D. Beard Jr., W.W. Taylor and S.J. Cooke. 2016. To manage inland fisheries is to manage at the social-ecological watershed scale. Journal of Environmental Management. 181; 312-325.

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Hughes, R.M., C. B. M. Alves, F. Amezcua, J. Claussen, S. J. Cooke, I. G. Cowx, K. D. Fausch, M. T. Ferreira, W. G. Franzin, D. Hall, M. O. Ipinmoroti, R. Ligeiro, N. Mercado-Silva, M. Miller, P. S. Pompeu, D. C. Schmidt, L. G. M. Silva and B. F. Terra.  2016.  Preparing for international research and teaching.  Fisheries.  41:464-465.

Cooke, S.J., J.C. Rice, K.A. Prior, R. Bloom, O. Jensen, D.R. Browne, L.A. Donaldson, J.R. Bennett, J.C. Vermaire and G. Auld. 2016. The Canadian context for evidence-based conservation and environmental management.  Environmental Evidence. 5:14

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Whitney, J.E., R. Al-Chokhachy, D.B. Bunnell, C.A. Caldwell, S.J. Cooke, E.J. Eliason, M. Rogers, A. Lynch and C. Paukert. 2016. Physiological basis of climate change impacts on North American inland fishes. Fisheries. 41:7, 332-345.

Donaldson, L.A., and S.J. Cooke. 2016. The effectiveness of non-native fish eradication techniques in freshwater ecosystems: a systematic review protocol. Environmental Evidence. 5(12):1-10.

Cooke, S.J., E.G. Martins, D.P. Struthers, L.F.G. Gutowsky, M. Power, S.E. Doka, J.M. Dettmers, D.A. Crook, M.C. Lucas, C.M. Holbrook and C.C. Krueger. 2016. A moving target – incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations. Environmental Monitoring and Assessment. 188:Article #239.

Lennox R.J., S.J. Cooke, O.H. Diserud, T.B. Havn, M. Rognli, M. Johansen, E.B. Thorstad, F.G. Whoriskey and I. Uglem. 2016. Use of simulation approaches to evaluate the consequences of catch-and-release angling on the migration behaviour of adult Atlantic salmon (Salmo salar). Ecological Modeling. 333: 43-50.

Raby, G.D., M.T. Casselman, S.J. Cooke, S.G. Hinch, A.P. Farrell and T.D. Clark. 2016.  Aerobic scope increases throughout an ecologically relevant temperature range in coho salmon.  Journal of Experimental Biology. 219: 1922-1931.

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Lennox, R.J., M. Falkegård, L. A. Vøllestad, S.J. Cooke, and E.B. Thorstad. 2016. Influence of harvest restrictions on angler release behaviour and size selection in a recreational fishery. Journal of Environmental Management. 176: 139–148.

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Pankhurst, K., J.D. Midwood, H. Wachelka and S.J. Cooke. 2016. Comparative spatial ecology of sympatric adult muskellunge and northern pike during a one year period in an urban reach of the Rideau River, Canada. Environmental Biology of Fishes. 99:409-421.

Zolderdo, A.J., D.A. Algera, M.J. Lawrence, K.M. Gilmour, M.D. Fast, J. Thuswaldner, W. Willmore and S.J. Cooke. 2016. Stress, nutrition and parental care in a teleost fish: Exploring mechanisms with supplemental feeding and cortisol manipulation. Journal of Experimental Biology. 219: 1237-1248.

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Lynch, A. J., S. J. Cooke, A. Deines, S. Bower, D. B, Bunnell, I. G. Cowx, V. M. Nguyen, J. Nonher, K. Phouthavong, B. Riley, M. W. Rogers, W.W. Taylor, W.M. Woelmer, S. Youn and T. D. Beard, Jr. 2016. The social, economic, and ecological importance of inland fishes and fisheries. Environmental Reviews. 24: 115-121.

Lennox, R.J., I. Mayer, T.B. Havn, M.R. Johansen, K. Whoriskey, S.J. Cooke, E.B. Thorstad and I. Uglem. 2016.  Consequences of recreational angling and air exposure on the physiological status and reflex impairment of European grayling (Thymallus thymallus).  Boreal Environment Research. 21: 461–470.

Clark, T.D., N.B. Furey, E.L. Rechisky, M.K. Gale, K.M. Jeffries, A.D. Porter, M.T. Casselman, A.G. Lotto, D.A. Patterson, S.J. Cooke, A.P. Farrell, D.W. Welch and S.G. Hinch. 2016.  Tracking wild sockeye salmon smolts to the ocean reveals distinct regions of nocturnal movement and high mortality. Ecological Applications. 26: 959–978.

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Lennox, R.J., O.H. Diserud, S.J. Cooke, E.B. Thorstad, F.G. Whoriskey, Ø. Solem, T.B. Havn and I. Uglem. 2016.  Switching between gear types increases recapture rates of Atlantic salmon (Salmo salar) in catch-and-release fisheries. Ecology of Freshwater Fish. 25:422-428.

Cooke, S.J. 2016.  Unraveling the mystery of marine fish migration.  Book review of Secor’s “Ecology of Marine Fish Migration”. Ecology. 97:1086–1087

Ward, T.D., D.A. Algera, A.J. Gallagher, E. Hawkins, A. Horodysky, C. Jørgensen, S.S. Killen, D.J. McKenzie, J.D. Metcalfe, M.A. Peck, M. Vu, and S.J. Cooke. 2016. Understanding the Individual to Implement the Ecosystem Approach to Fisheries Management. Conservation Physiology. 4(1):cow005.  doi:10.1093/conphys/cow005

 

Cooke, S.J., V.M. Nguyen, J.M. Dettmers, R. Arlinghaus, M.C. Quist, D. Tweddle, O.L.F. Weyl, R. Raghavan, M. Portocarrero-Aya, E. Agudelo Cordoba, and I.G. Cows. 2016. Sustainable inland fisheries – Perspectives from the recreational, commercial and subsistence sectors from around the globe. Pages 467-505  in G.P. Closs, M. Krkosek and J.D. Olden, Eds. Conservation of Freshwater Fishes. Cambridge University Press, Cambridge.

Stevens, E.D., R. Arlinghaus, H. Browman, S.J. Cooke, I.G. Cowx, B.K. Diggles, B. Key, J.D. Rose, W. Sawynok, A. Schwab, A.B. Skiftesvik, C.A. Watson and C.D.L. Wynne.  2016.  Stress is not pain. Comment on Elwood and Adams (2015) Electric shock causes physiological stress responses in shore crabs, consistent with prediction of pain.  Biology Letters. 12:20151006. doi:10.1098/rsbl.2015.1006.

Cooke, S.J.  2016.  Spinning our wheels and deepening the divide: Call for an evidence-based approach to the fish pain debate.  Animal Sentience.  2016.072.

Killen, S.S., B. Adriaenssens, S. Marras, G. Claireaux and S.J. Cooke.  2016.  Context-dependency of trait repeatability and its relevance for management and conservation of fish populations.  Conservation Physiology. 4:10.1093/conphys/cow007.

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Hatry, C., J.D. Thiem, D. Hatin, P. Dumont, K.E. Smokorowski and S.J. Cooke.  2016.  Fishway approach behaviour and passage of three redhorse species (Moxostoma anisurum, M. carinatum, and M. macrolepidotum) in the Richelieu River, Quebec.  Environmental Biology of Fishes. 99:249-263.

Fish and Fisheries

Cooke, S.J., Z.S. Hogan, P.A. Butcher, M.J.W. Stokesbury, R. Raghavan, A.J. Gallagher, N. Hammerschlag and A.J. Danylchuk.  In Press.  Angling for endangered fish: Conservation problem or conservation action?  Fish and Fisheries. 17: 249-265.

Horodysky, A.Z., S.J. Cooke, J.E. Graves and R.W. Brill.  2016.  Fisheries conservation on the high seas:  Linking conservation physiology and fisheries ecology for the management of large pelagic fishes.  Conservation Physiology.  4:10.1093/conphys/cov059.

Crossin, G.T., O.P. Love, S.J. Cooke and T.D. Williams.  2016.  Glucocorticoid manipulations in free-living animals: considerations of dose delivery, life-history context, and reproductive state.  Functional Ecology.  30:116-125. doi: 10.1111/1365-2435.12482.

 

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King, G.D., J.M. Chapman, S.J. Cooke and C.D. Suski.  2016.  Stress in the neighborhood: Tissue glucocorticoids relative to stream quality for five species of fish.  Science of the Total Environment. 547:87-94.

Filguiera, R., J.M. Chapman, C.D. Suski, and S.J. Cooke. 2016. The influence of watershed land use cover on stream fish diversity and size-at-age of a generalist fish. Ecological Indicators. 60: 248-257.

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Bower, S.D., A.J. Danylchuk, J.W. Brownscombe, J.D Thiem, and S.J. Cooke.  2016.  Evaluating consequences of catch-and-release angling on the physiological status of peacock bass (Cichla ocellaris) in Puerto Rico: A rapid assessment approach. Fisheries Research.  175:95-102. dx.doi.org/10.1016/j.fishres.2015.11.014

 

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Belanger, C.B., M.N. Vera-Chang, T.W. Moon, J.D. Midwood, C.D. Suski and S.J. Cooke.  2016.  Seasonal variation in baseline and maximum whole-body glucocorticoid concentrations in a small-bodied stream fish independent of habitat quality.  Comparative Biochemistry and Physiology A.  192:1-6. dx.doi.org/10.1016/j.cbpa.2015.10.027.

Madliger, C.L., S.J. Cooke, E.J. Crespi, J.L. Funk, K.R. Hultine, K.E. Hunt, J.R. Rohr, B.J. Sinclair, C.D. Suski, C.K.R. Willis and O.P. Love.  2016.  Success stories and emerging themes in conservation physiology. Conservation Physiology. 4:DOI: 10.1093/conphys/cov057.

2015

Hlevca, B., S.J. Cooke, J.D. Midwood, S.E. Doka, R. Portiss and M. Wells. 2015. Characterization of water temperature variability within a harbour connected to a large lake. Journal of Great Lakes Research. 41:1010-1023.

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Gallagher, A.J., S.J. Cooke, and N. Hammerschlag. 2015467. Risk perceptions and conservation ethic among recreational anglers targeting threatened sharks in the subtropical Atlantic. Endangered Species Research. 29: 81-93 doi: 10.3354/esr00704.

 

 

Murchie, K.J., S. Clark Danylchuk, A.J. Danylchuk, and S.J. Cooke. 2015. Fish community and habitat assessments of three adjacent tidal creeks on Cape Eleuthera, The Bahamas.  Pages 67-80 in K.J. Murchie and P.P. Daneshgar (Eds.), Proceedings of the Second International Symposium on Mangroves as Fish Habitat. Mazatlán, Mexico.  American Fisheries Society, Bethesda, Maryland.

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Brownscombe, J.W., L. Griffin, T. Gagne, C.R. Haak, S.J. Cooke and A.J. Danylchuk.  2015.  Physiological stress and reflex impairment of recreationally angled bonefish in Puerto Rico.  Environmental Biology of Fishes.  98:2287-2295.

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Adams, A.J., and S.J. Cooke. 2015. Advancing the science and management of flats fisheries for bonefish, tarpon, and permit. Environmental Biology of Fishes. 98:2123-2131.

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Murchie, K.J., A.D. Shultz, J.A. Stein, S.J. Cooke, J. Lewis, J. Franklin, G. Vincent, E.J. Brooks, J.E. Claussen and D.P. Philipp.  2015.  Defining adult bonefish (Albula vulpes) movement corridors around Grand Bahama in the Bahamian Archipelago.  Environmental Biology of Fishes. 98:2203-2212.

Cooke, S.J., R. Arlinghaus, B.M. Johnson, and I.G. Cowx. 2015. Recreational fisheries in inland waters. Pages 449-465 in J. Craig, editor. Freshwater Fisheries Ecology. Blackwell Science, UK.

Arlinghaus, R., K. Lorenzen, B.M. Johnson, S.J. Cooke, and I.G. Cowx. 2015. Managing freshwater fisheries: addressing habitat, people and fish. Pages 557-579 in J. Craig, editor. Freshwater Fisheries Ecology. Blackwell Science, UK.

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Midwood, J.D., M.H. Larsen, M. Boel, K. Aarestrup and S.J. Cooke.  2015.  An experimental field evaluation of winter carryover effects in semi-anadromous brown trout (Salmo trutta).  Journal of Experimental Zoology A. 323A:645–654.

Drenner, S.M., S.G. Hinch. E.G. Martins, N. Furey, T.D. Clarke, S.J.Cooke, D. Patterson, D. Robichaud, D.W. Welch. A.P. Farrell and R. Thomson. 2015. Environmental conditions and physiological state influence estuarine movements of homing sockeye salmon.  Fisheries Oceanography.  24: 307–324.

Raby, G.D., S.G. Hinch, D.A. Patterson, J.A. Hills, L.A. Thompson, and S.J. Cooke. 2015. Mechanisms to explain purse seine bycatch mortality of coho salmon. Ecological Applications. 25: 1757-1775.

Raby, G.D., M.R. Donaldson, S.G. Hinch, T.D. Clark, E.J. Eliason, K.M. Jeffries, K.V. Cook, A. Teffer, A.L. Bass, K.M. Miller, D.A. Patterson, A.P. Farrell and S.J. Cooke. 2015. Fishing for effective conservation: context and biotic variation are keys to understanding the survival of Pacific salmon after catch-and-release.  Integrative and Comparative Biology. 55: 554-576.

 

 

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Handley, G., C.M. Frantz, P.M. Kocovsky, D.R. DeVries, S.J. Cooke and J. Claussen.  2015.  An examination of gender differences in the American Fisheries Society peer review process.  Fisheries.  40:442-451.

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Cooke, S.J., J.M. Chapman and J.C. Vermaire.  2015.  On the apparent failure of silt fences to protect freshwater ecosystems from sedimentation: a call for improvements in science, technology, training and compliance monitoring.  Journal of Environmental Management.  164:67-73.

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Philipp, D.P., J.E. Claussen, J.B. Koppelman, J.A. Stein, S.J. Cooke, C.D. Suski, D.H. Wahl, D.A.H. Sutter, and R. Arlinghaus.  2015.  Fisheries-induced evolution in largemouth bass – linking vulnerability to angling, parental care, and fitness.  American Fisheries Society Symposium.  82:223–234.

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Horodysky, A.Z., S.J. Cooke and R.W. Brill.  2015.  Physiology in the Service of Fisheries Science – Why Thinking Mechanistically Matters.  Reviews in Fish Biology and Fisheries.  25:425-447.

Gupta, N., S.D. Bower, R. Raghavan, A.J. Danylchuk, and S.J. Cooke. 2015. Status of recreational fisheries in India: development, issues and opportunities.  Reviews in Fisheries Science and Aquaculture. 23:291-301.

Lennox, R.J., J.W. Brownscombe, S.J. Cooke, A.J. Danylchuk, P.S. Moro, E.A. Sanches, and D. Garonne-Neto. 2015. Evaluation of catch-and-release angling practices for the fat snook Centropomus parallelus in a Brazilian estuary. Ocean and Coastal Management. 113:1-7.

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Havn, T.B., I. Uglem, Ø. Solem, S.J. Cooke, F.G. Whoriskey and E.B. Thorstad.  2015.  The effect of catch-and-release angling at high water temperatures on behavior and survival of Atlantic salmon during spawning migration.  Journal of Fish Biology. 87:342–359.

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Midwood, J.D., S.J. Kerr, P. Levick and S.J. Cooke.  2015.  Muskellunge science and management: progress through partnerships.  Environmental Biology of Fishes. 98:2031-2035.

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Maitland, B.M., S.J. Cooke and M. Poesch.  2015.  Finding the path to a successful graduate and research career: Advice for early career researchers.  Fisheries.  40:399-403.

Chapman, J.M., D. Algera, M. Dick, E.E. Hawkins, M.J. Lawrence, R.J. Lennox, A.M. Rous, C.M. Souliere, H.L.J. Stemberger, D.P. Struthers, M. Vu, T.D. Ward, A.J. Zolderdo and S.J. Cooke. 2015. Being relevant: Practical guidance for early career researchers interested in solving conservation problems. Global Ecology and Conservation. 4: 334-348.

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Thiem, J.D.,  J.W. Dawson, A.C. Gleiss, E.G. Martins, A. Haro, T. Castro-Santos, A.J. Danylchuk, R.P. Wilson and S.J. Cooke.  2015.  Accelerometer-derived activity correlates with volitional swimming speed in lake sturgeon (Acipenser fulvescens).  Canadian Journal of Zoology. 93:645-654.

Transactions of the American Fisheries Society

Rous, A.M., A. Forrest, E. Hart McKittrick, G. Letterio, J. Roszell, T. Wright, and S.J. Cooke. 2015. Orientation and position of fish affects recovery time from electrosedation. Transactions of the American Fisheries Society 144: 820-828.

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Philipp, D.P., J.E. Claussen, J.B. Koppelman, J.A. Stein, S.J. Cooke, C.D. Suski, D.H. Wahl, D.A. Sutter, R. Arlinghaus. 2015. Fisheries-Induced Evolution in Largemouth Bass: Linking Vulnerability to Angling, Parental Care, and Fitness. American Fisheries Society Symposium 82: 223-234.

Hussey, N.E., S.T. Kessel, K. Aarestrup, S.J. Cooke, P.D. Cowley, A.T. Fisk, R.G. Harcourt, K.N. Holland, S.J. Iverson, J.F. Kocik, J.E. Mills Flemming and F.G. Whoriskey.  In Press.  Aquatic animal telemetry: a panoramic window into the underwater world. Science DOI: 10.1126/science.1255642

Transactions of the American Fisheries Society

Robinson, K.A., S.G. Hinch, G.D. Raby, M.R. Donaldson, D. Robichaud, D.A. Patterson, and S.J. Cooke. 2015. Influence of post-capture ventilation assistance on migration success of adult sockeye salmon following capture and release. Transactions of the American Fisheries Society 144: 693-704.

Raby, G.D., T.D. Clark, A.P. Farrell, D.A. Patterson, N.N. Bett, S.M. Wilson, W.G. Willmore, Cory D. Suski, S.G. Hinch and S.J. Cooke.   2015.  Facing the river gauntlet: understanding the effects of fisheries capture and water temperature on the physiology of coho salmon.  PLoS One 10:e0124023.

Chapman, J.M., D.J. Marcogliese, C.D. Suski, and S.J. Cooke. 2015. Variation in parasite communities and health indices of juvenile Lepomis gibbosus across a gradient of watershed land-use and habitat quality. Ecological Indicators doi:10.1016/j.ecolind.2015.05.013

Raby, G.D., S.M. Wilson, D.A. Patterson, S.G. Hinch, T.D. Clark, A.P. Farrell, and S.J. Cooke. 2015. A physiological comparison of three techniques for reviving sockeye salmon exposed to a severe capture stressor during upriver migration. Conservation Physiology doi:10.1093/conphys/cov015

Comparative Biochemistry and Physiology Cover Image

Binder, T.R., C.M. O’Connor, S.H. McConnachie, S.M. Wilson, M.A. Nannini, D.H. Wahl and S.J. Cooke.  2015.  Is winter worse for stressed fish?  The consequences of exogenous cortisol manipulation on over-winter survival and condition of juvenile largemouth bass.  Comparative Biochemistry and Physiology A 187: 97-102.

 

Transactions of the American Fisheries Society

Lennox, R. J., Uglem, I., Cooke, S. J., Næsje, T., Whoriskey, F. G., Havn, T. B., Ulvan, E. M., Solem, Ø., Thorstad, E. B. 2015. Does catch-and-release angling alter the behavior and fate of adult Altantic Salmon during upriver migration?  Transactions of the American Fisheries Society. 144:2, 400-409.

Cooke, S.J., and J.C. Vermaire.  2015.  Environmental studies and environmental science today: inevitable mission creep and integration in action-oriented transdisciplinary areas of inquiry, training and practice.  Journal of Environmental Studies and Sciences.  5:70-78.

Cull, F., C.M. O’Connor, C.D. Suski, A.D. Shultz, A.J. Danylchuk and S.J. Cooke.  2015.  Puff and bite: The relationship between the glucocorticoid stress response and anti-predator performance in checkered puffer (Sphoeroides testudineus).  General and Comparative Endocrinology  214:1-8.

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Pleizier, N., L.F.G. Gutowsky, V.M. Peddemors, S.J. Cooke and P.A. Butcher.  2015.  Variation in whole-, landed- and trimmed-carcass and fin-weight ratios for various sharks captured on demersal set-lines off eastern Australia.  Fisheries Research. 167:190-198.

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Taylor, J.J., S.M. Wilson, N.M. Sopinka, S.G. Hinch, D.A. Patterson, S.J. Cooke and W.G. Willmore.  2015.  Are there intergenerational and population-specific effects of oxidative stress in sockeye salmon (Oncorhynchus nerka)?  Comparative Biochemistry and Physiology A. 184:97-104.

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Cooke, S.J., and K.J. Murchie. 2015. Status of aboriginal, commercial and recreational inland fisheries in North America: past, present and future. Fisheries Management and Ecology 22: 1-111.

Gallagher, A.J., N. Hammerschlag, S.J. Cooke, D.P. Costa, and D.J. Irschick. 2015. Evolutionary theory as a tool for predicting extinction risk. Trends in Ecology and Evolution 30:61-65.

Fisheries Research Cover Image

Lennox, R. J., K. Whoriskey, G. T. Crossin,  and S. J. Cooke. 2015. Influence of angler hook-set behaviour relative to hook type on capture success and incidences of deep hooking and injury in a teleost fish. Fisheries Research 164: 201-205.

Shiffman, D.S., A.J. Gallagher, J. Wester, C.C. Macdonald, A.D. Thaler, S.J. Cooke, and N. Hammerschlag. 2015. A letter of clarification from the authors of “trophy fishing for species threatened with extinction”. Marine Policy 53: 213-214.

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Tuor, K.M.F., K.E. Smokorowski and S.J. Cooke.  2015 The influence of fluctuating ramping rates on the diets of small-bodied fish species of boreal rivers.  Environmental Biology of Fishes 98:345-355.

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Cull, F., C.D. Suski, A. Shultz, A.J. Danylchuk, C.M. O’Connor, K.J.  Murchie and S.J. Cooke.  2015.  Consequences of experimental cortisol manipulations on the thermal biology of the checkered puffer (Sphoeroides testudineus) in laboratory and field environments.  Journal of Thermal Biology 47:63-74.

2014

Hammerschlag, N., S.J. Cooke, A.J. Gallagher and B.J. Godley.  2014.  Considering the fate of electronic tags: user responsibility and interactions with stakeholders and other scientists when encountering tagged aquatic animals.  Methods in Ecology and Evolution 11:1147-1153. 

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Cooke, S.J.  2014.  Making way for migratory fish.  Book review of Running Silver: Restoring Atlantic Rivers and Their Great Fish Migrations. John Waldman. Lyons Press.  BioScience 64:1053-1054.

Physiological and Biochemical Zoology

Burnett, N.J., S.G. Hinch, D.C. Braun, M.T. Casselman, C.T. Middleton, S.M Wilson, and S.J. Cooke. 2014. Burst swimming in areas of high flow: delayed consequences of anaerobiosis in wild adult sockeye salmon. Physiological and Biochemical Zoology 87:587-598.

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Samson, E., J.W. Brownscombe and S.J. Cooke. 2014.  Behavioural and reflex responses of mottled mojarra Eucinostomus lefroyi (Gerreidae) to cold shock exposure.  Aquatic Biology. 23: 101-108.

 

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Hayden, T.A., C.M. Holbrook, D. Fielder, C.S. Vandergoot, R.A. Bergstedt,  J.M. Dettmers, C.C. Krueger and S.J. Cooke.  2014.  Acoustic telemetry reveals large-scale migration patterns for walleye in Lake Huron.  PLoS One DOI:10.1371/journal.pone.0114833

Brownscombe, J.W., K. Marchand, K. Tisshaw, V. Fewster, O. Groff, M. Pichette, M. Seed,  L.F.G. Gutowsky, A.D.M. Wilson and S.J. Cooke. 2014. The influence of water temperature and accelerometer-determined fight intensity on physiological stress and reflex impairment of angled largemouth bass. Conservation Physiology DOI: 10.1093/conphys/cou057

 

Donaldson, M.R., S.G. Hinch, C.D. Suski, A.T. Fisk, M.R. Heupel and S.J. Cooke.  2014.  Making connections in aquatic ecosystems with acoustic telemetry monitoring.  Frontiers in Ecology and Environment 12: 565–573.

north american journal of fisheries management cover image

Stein, J.A., J.E. Claussen, S.J. Cooke and D.P. Philipp. 2014.  Not all biases are created equal:  A comment on Snorkel survey bias observed by Hessenauer et al. 2014.  North American Journal of Fisheries Management 34:1204-1206.

Finn, J.T., J.W. Brownscombe, C.R. Haak, S.J. Cooke, R. Cormier, T. Gagne, and A.J. Danylchuk.  2014 Applying network methods to acoustic telemetry data: modeling the movements of tropical marine fishes. Ecological Modelling 293: 139-149.

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Schwabe, M., T. Meinelt, T.M. Phan, S.J. Cooke and R. Arlinghaus. 2014.  Absence of handling-induced Saprolegnian infection in juvenile Rainbow Trout Oncorhynchus mykiss, with implications for catch-and-release angling.  North American Journal of Fisheries Management 34:1221-1226.

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Halliday, W.D., J.E. Paterson, L.D. Patterson, S.J. Cooke and G. Blouin-Demers.  2014.  Testosterone, body size, and sexual signals predict parasite load in Yarrow’s spiny lizards (Sceloporus jarrovii).  Canadian Journal of Zoology  92: 1075-1082.

Cooke, S.J., M.R. Donaldson, and T.D. Clark. 2014. Practical guidance for early career researchers dealing with tardy or unresponsive co-authors. Ideas in Evolution and Ecology 7: 73-76.

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Cooke, S.J., R. Arlinghaus, D. M. Bartley, T.D. Beard, I.G. Cowx, T.E. Essington, O.P. Jensen, A. Lynch, W.W. Taylor, and R. Watson.  2014.  Where the waters meet: Sharing ideas and experiences between inland and marine realms to promote sustainable fisheries management.  Canadian Journal of Fisheries and Aquatic Sciences  71: 1593-1601.  (Invited paper arising from S. Cooke’s J.C. Stevenson Lectureship at CCFFR in Windsor in 2013)

Raby, G.D., M.R. Donaldson, V.M. Nguyen, M.K. Taylor, N.M. Sopinka, K.V. Cook, D.A. Patterson, D. Robichaud, S.G. Hinch, and S.J. Cooke. 2014. Bycatch mortality of endangered coho salmon: impacts, solutions, and aboriginal perspectives. Ecological Applications 24: 1803-1819.

Coristine, L.E., C.M. Robillard, J.T. Kerr, C.M. O’Connor, D. Lapointe and S.J. Cooke.  2014.  A conceptual framework for the emerging discipline of conservation physiology.  Conservation Physiology DOI: 10.1093/conphys/cou033

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Martins, E.G., L.F.G. Gutowsky, P.M Harrison, J.E. Mills Flemming, I.D. Jonsen, D.Z. Zhu, A. Leake, D.A. Patterson, M. Power and S.J. Cooke.  2014.  Behavioral attributes of turbine entrainment risk for adult resident fish revealed by acoustic telemetry and state-space modeling.  Journal of Animal Biotelemetry  2: 13.

Miller, K.M., A. Teffer, S. Tucker, S. Li, A.D. Schulze, M. Trudel, F. Juanes,  A. Tabata,  K.H. Kaukinen, N.G. Ginther, T.J. Ming, S.J. Cooke, M. Hipfner, D.A. Patterson, and S.G. Hinch.  2014.  Infectious disease, shifting climates and opportunistic predators: cumulative factors potentially impacting wild salmon declines.  Evolutionary Applications  7: 812-855.

 

Bower, S.D., Nguyen, V.M., Danylchuk, A.J., Beard Jr., T.D., and S.J. Cooke. 2014. Inter-sectoral conflict and recreational fisheries of the developing world: Opportunities and challenges for co-operation. InMcConney, P., R. Medeiros and M. Pena. Eds. 2014. Enhancing Stewardship in Small-Scale Fisheries: Practices and Perspectives. Too Big To Ignore (TBTI) and Centre for Resource Management and Environmental Studies, The University of the West Indies, Cave Hill Campus, Barbados. CERMES Technical Report No. 73.

Taylor, M.K., C.T. Hasler, S.G. Hinch, B. Lewis, D.C. Schmidt and S.J. Cooke.  2014.  Reach-scale movements of bull trout (Salvelinus confluentus) relative to hydropeaking operations in the Columbia River, Canada. Ecohydrology  7: 1079-1086.

Burnett, N.J., S.G. Hinch, M.R. Donaldson, N.B. Furey, D.A. Patterson, D.W. Roscoe, and S.J. Cooke. 2014Alterations to dam-spill discharge influence sex-specific activity, behaviour and passage success of migrating adult sockeye salmon. Ecohydrology 7: 1094-1104.

Shiffman, D.S., A.J. Gallagher, J. Wester, C. Macdonald, A.D. Thaler, S.J. Cooke and N. Hammerschlag.  2014.  Trophy fishing for species threatened with extinction: a way forward  building on a history of conservation.  Marine Policy  50: 318-322.

Gale, M.K., S.G. Hinch, S.J. Cooke, M.R. Donaldson, E.J. Eliason, K.M. Jeffries, E.G. Martins and D.A. Patterson.  2014.  Observable impairments predict mortality of captured and released sockeye salmon at various temperatures.  Conservation Physiology DOI: 10.1093/conphys/cou029

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Taylor, M.K., C.T. Hasler, C.S. Findlay, B. Lewis, D.C. Schmidt, S.G. Hinch and S.J. Cooke. 2014. Hydrologic correlates of bull trout (Salvelinus confluentus) swimming activity in a hydropeaking river. River Research and Applications 30: 756-765.

Colotelo, A.H., S.J. Cooke, K. Smokorowski, and T. Haxton.  2014.  Comparative evaluation of four presumptive tests for blood to detect epithelial injury on fish.  Journal of Fish and Wildlife Management 5: 26-34.

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Taylor, M.K., and S.J. Cooke. 2014 Repeatability of movement behaviour in a wild salmonid revealed by telemetry.  Journal of Fish Biology 84: 1240 -1246.

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Donaldson, M.R., S.G. Hinch, K.M. Jeffries, D.A. Patterson, S.J. Cooke, A.P. Farrell, and K.M. Miller. 2014. Species- and sex-specific responses and recovery of wild, mature Pacific salmon to an exhaustive exercise and air-exposure stressor. Comparative Biochemistry and Physiology A 173: 16-23.

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Szekeres, P., J.W. Brownscombe, F. Cull, A.J. Danylchuk, A.D. Shultz, C.D. Suski, K.J. Murchie and S.J. Cooke. 2014. Physiological and behavioural consequences of cold shock on bonefish (Albula vulpes) in The Bahamas. Journal of Experimental Marine Biology and Ecology 459: 1-7.

Jeffrey, J.D., S.J. Cooke and K.M. Gilmour. 2014.  Regulation of hypothalamic-pituitary-interrenal axis function in male smallmouth bass (Micropterus dolomieu) during parental care.  General and Comparative Endocrinology  204: 195–202. 

Jepsen, N., K. Aarestrup and S.J. Cooke. 2014. Tagging fish in the field: ethical and procedural considerations. A comment on the recent paper of D. Mulcahy; Legal, ethical and procedural bases for the use of aseptic techniques to implant electronic devices. Journal of Fish and Wildlife Management 4: 211-219. 

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Cooke, S.J., and C.M. O’Connor.  2014.  Mentors matter: strategies for selecting the right mentor.  Pages 15-21 in W. Taylor, A. Lynch and N. Leonard, Eds.  Future of Fisheries: Perspectives for the Next Generation of Professionals.  American Fisheries Society, Bethesda, MD.

Fish and Fisheries

Raby, G.D., J.R. Packer, A.J. Danylchuk, and S.J. Cooke. 2014. The understudied and underappreciated role of predation in the mortality of fish released from fishing gears. Fish and Fisheries 15: 489-505.

Cooke, S.J., S.S. Killen, J.D. Metcalfe, D.J. McKenzie, D. Mouillot, C. Jørgensen and M.A. Peck. 2014Conservation physiology across scales: Insights from the marine realm. Conservation Physiology DOI:10.1093/conphys/cou024

Cook, K.V., G.T. Crossin, D.A. Patterson, S.G. Hinch, K.M. Gilmour and S.J. Cooke.  2014. The stress response predicts migration failure but not migration rate in a semelparous fish.  General and Comparative Endocrinology 202: 44-49.

Stoot, L.J., N.A. Cairns, F. Cull, J.J. Taylor, J.D. Jeffrey, F. Morin, J.W. Mandelman, T.D. Clark and S.J. Cooke.  2014. Use of portable blood physiology point-of-care devices for basic and applied research on vertebrates – a review.  Conservation Physiology DOI: 10.1093/conphys/cou011

Hasler, C.T., E. Guimond, B. Mossop, S.G. Hinch, and S.J. Cooke.  2014.  Effectiveness of pulse flows in a regulated river for inducing upstream movement of an imperiled stock of Chinook salmon.  Aquatic Sciences  76: 231-241.

O’Connor, C.M., D.R. Norris, G.T. Crossin and S.J. Cooke. 2014.  Biological carryover effects: linking common concepts and mechanisms in ecology and evolution.  Ecosphere  5(3): article 28 DOI: 10.1890/ES13-00388.1

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Rapp, T., J. Hallermann, S.J. Cooke, S.K. Hetz, S. Wuertz and R. Arlinghaus.  2014 Consequences of air exposure on the physiology and behavior of caught-and-released Common Carp in the laboratory and under natural conditions.  North American Journal of Fisheries Management 34: 232-246.

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Kessel S. T., S.J. Cooke, M.R. Heupel, N.E. Hussey, C.A. Simpfendorfer, S. Vagle, and A.T. Fisk.  2014.  A review of detection range testing in aquatic passive acoustic telemetry studies.  Reviews in Fish Biology and Fisheries  24: 199-218.

Danylchuk, A.J., C.D. Suski, J.W. Mandelman, K.J. Murchie, C.R. Haak, A.M.L. Brooks and S.J. Cooke. 2014 Hooking injury, physiological status, and short-term mortality following catch-and-release recreational angling of juvenile lemon sharks (Negaprion bevirostris) in The Bahamas.  Conservation Physiology DOI: 10.1093/conphys/cot036

Cooke, S.J., and M.R. Donaldson.  2014.  Self-citation by researchers: narcissism or an inevitable outcome of a cohesive and sustained research program?  Ideas in Ecology and Evolution 7: 1-2.

Raison, T.,  A. Nagrodski, C.D. Suski and S.J. Cooke. 2014. Exploring the potential effects of lost or discarded soft plastic fishing lures on fish and the environment.  Water, Air, and Soil Pollution 225: 1869.

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Lapointe, N.W.R., S.J. Cooke, J.G. Imhof, D. Boisclair, J.M. Casselman, R.A. Curry, O.E. Langer, R.L. McLaughlin, C.K. Minns, J.R. Post, M. Power, J.B. Rasmussen, J.D. Reynolds, J.S. Richardson, and W.M. Tonn.  2014.  Principles for ensuring healthy and productive freshwater ecosystems that support sustainable fisheries.  Environmental Reviews 22: 1-25.

Midwood, J.D., Larsen, M.H., Boel, M., Jepsen, N., Aarestrup, K., & Cooke, S.J. 2014. Does cortisol manipulation influence outmigration behaviour, survival and growth of sea trout? A field-test of carryover effects in wild fish. Marine Ecology Progress Series 496: 135-144.

Drenner, S.M., S.G. Hinch, E.G. Martins, D. Robichaud, L.A. Thompson, D.A. Patterson, S.J. Cooke and R.E. Thomson.  2014.  Variable thermal experience and diel thermal patterns of homing sockeye salmon in coastal marine waters.  Marine Ecology Progress Series 496: 109-124.

Gallagher, A.J., Serafy, J.E., Cooke, S.J., Hammerschlag, N. 2014. Physiological stress response, reflex impairment, and survival of five sympatric shark species following experimental capture and release. Marine Ecology Progress Series 496: 207-218.

Crossin, G.T., S.J. Cooke, J.A. Goldbogen, and R.A. Phillips. 2014.  Tracking fitness in marine vertebrates: a review of current knowledge and opportunities for future research.  Marine Ecology Progress Series 496: 1-17.

Wilson, S.M., S.G. Hinch, S.M. Drenner, E.G. Martins, N. B. Furey,  D. A. Patterson, D.W. Welch, and S.J. Cooke. 2014.  Coastal marine and in-river migration behaviour of adult sockeye salmon en route to spawning grounds.  Marine Ecology Progress Series 496: 71-84.

Marriner, B.A., A.B.M. Baki, D.Z. Zhu, J.D. Thiem, S.J. Cooke, and C. Katopodis.  2014 Field and numerical assessment of turning pool hydraulics in a vertical slot fishway.  Ecological Engineering  63: 88-101.

Physiological and Biochemical Zoology

Cooke, S.J., V. Messmer, A.J. Tobin, M.S. Pratchett, and T.D. Clark. 2014. Refuge-seeking impairments mirror metabolic recovery following fisheries-related stressors in the Spanish flag snapper (Lutjanus carponotatus) on the Great Barrier Reef. Physiological and Biochemical Zoology 87: 136-147.

Physiological and Biochemical Zoology

Cooke, S.J., D.T. Blumstein, R. Buchholz, T. Caro, E. Fernández-Juricic, C.E. Franklin, J. Metcalfe, C.M. O’Connor, C. Cassidy St. Clair, W.J. Sutherland, and M. Wikelski. 2014. Physiology, behaviour and conservation. Physiological and Biochemical Zoology 87: 1-14.

Physiological and Biochemical Zoology

Hatry, C., J.D. Thiem, T.R. Binder, D. Hatin, P. Dumont, K.M. Stamplecoskie, J.M. Molina, K.E. Smokorowski, and S.J. Cooke. 2014.. Comparative physiology and relative swimming performance of three redhorse (Moxostoma spp.) species: associations with fishway passage success. Physiological and Biochemical Zoology 87: 148-159.

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Donaldson, M.R. and S.J. Cooke.  2014.  Scientific publications: Moving beyond quality and quantity toward influence. BioScience 64: 12-13.

Physiological and Biochemical Zoology

Nguyen, V.M., E.G. Martins, D. Robichaud, G.D. Raby, M.R. Donaldson, A.G. Lotto, W.G. Willmore, D.A. Patterson, A.P. Farrell, S.G. Hinch, and S.J. Cooke. 2014. Disentangling the roles of air exposure, gillnet injury, and facilitated recovery on the post-capture and release mortality and behavior of adult migratory sockeye salmon (Oncorhynchus nerka) in freshwater. Physiological and Biochemical Zoology 87: 125-135. (focused issue on conservation physiology).

Cooke, S.J.  2014.  Conservation physiology today and tomorrow.  Conservation Physiology DOI: 10.1093/conphys/cot033 (Editorial)

Fish and Fisheries

Rose, J.D., R. Arlinghaus, S.J. Cooke, B.K. Diggles, W. Sawynok, E.D. Stevens and C.D.L. Wynne. 2014. Can fish really feel pain? Fish and Fisheries 15: 97-133.

2013

Endangered Species Research Cover Image

Cairns, N.A., L.J. Stoot, G. Blouin-Demers, and S.J. Cooke. 2013. Refinement of bycatch reduction devices to exclude freshwater turtles from commercial fishing nets. Endangered Species Research 22: 251-261.

Journal of International Wildlife Law & Policy

Cooke, S.J., V.M. Nguyen, K.J. Murchie, J.D. Thiem, M.R. Donaldson, S.G. Hinch, R.S. Brown and A. Fisk.  2013. To tag or not to tag: animal welfare, conservation and stakeholder considerations in fish tracking studies that use electronic tags. Journal of International Wildlife Law & Policy 16: 352-374.

Journal of International Wildlife Law & Policy

Young, N., I. Gingras, V.M. Nguyen, S.J. Cooke, and S.G. Hinch. 2013. Mobilizing new science into management practice: the challenge of biotelemetry for fisheries management, a case study of Canada’s Fraser River. Journal of International Wildlife Law & Policy 16: 331-351.

Endangered Species Research Cover Image

Nguyen, V.M., S.M. Larocque, L.J. Stoot, N.A. Cairns, G. Blouin-Demers, and S.J. Cooke.  2013. Perspectives of fishers on turtle by-catch and conservation strategies in a small-scale inland commercial hoop net fishery.  Endangered Species Research 22: 11-22.

Fish and Fisheries

Cooke, S.J., C.D. Suski, R. Arlinghaus, and A.J. Danylchuk. 2013. Voluntary institutions and behaviours as alternatives to formal regulations in recreational fisheries management. Fish and Fisheries 14: 439–457.

Journal of Fish Biology Cover Image

Eliason, E.J., S.M. Wilson, A.P. Farrell, S.J. Cooke, and S.G. Hinch. 2013. Low cardiac and aerobic scope in a coastal population of sockeye salmon Oncorhynchus nerka with a short upriver migration. Journal of Fish Biology 82: 2104-2112.

Journal of International Wildlife Law & Policy

VanderZwaag, D.L., R. Apostle, and S.J. Cooke. 2013. Tracking and protecting marine species at risk: scientific advances, sea of governance challenges. Journal of International Wildlife Law & Policy 16: 105-111.

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Nguyen, V.M., M.A. Rudd, S.G. Hinch and S.J. Cooke.  2013 Recreational anglers’ attitudes, beliefs, and behaviors related to catch-and-release practices of Pacific salmon in British Columbia.  Journal of Environmental Management 128: 852-865.

Journal of Fish Biology Cover Image

Cooke, S.J., N.W.R. Lapointe, E.G. Martins, J.D. Thiem, G.D. Raby, M.K. Taylor, T.D. Beard Jr., and I.G. Cowx.  2013 Failure to engage the public in issues related to inland fishes and fisheries: strategies for building public and political will to promote meaningful conservation.  Journal of Fish Biology (Special Issue from World Fisheries Congress) 83: 997-1018.

Transactions of the American Fisheries Society

Beardsall, J.W., M.F. McLean, S.J. Cooke, B.W. Wilson, M. J. Dadswell and M.J.W. Stokesbury. 2013. Consequences of incidental otter trawl capture on survival and physiological status of threatened Atlantic sturgeon Acipenser oxyrinchus. Transactions of the American Fisheries Society 142: 1202-1214.

Endangered Species Research Cover Image

Stoot, L.J., N.A. Cairns, G. Blouin-Demers, and S.J. Cooke.  2013. Physiological disturbances and behavioural impairment associated with the incidental capture of freshwater turtles in a commercial fyke-net fishery.  Endangered Species Research 21: 13-23.

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Colotelo, A.H., S.J. Cooke, G. Blouin-Demers, K.J. Murchie, T. Haxton, and K. Smokorowski. 2013. Influence of water temperature and net tending frequency on the condition of fish bycatch in a small-scale inland commercial fyke net fishery. Journal for Nature Conservation 21: 217-224.

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Hatry C., T.R. Binder, J.D. Thiem, C.T. Hasler, K.E. Smokorowski, K.D. Clarke, Katopodis C., S.J. Cooke. 2013. The status of fishways in Canada: trends identified using the national CanFishPass database. Reviews in Fish Biology and Fisheries 23: 271-281.

Cooke, S. J., & Hinch, S. G. 2013. Improving the reliability of fishway attraction and passage efficiency estimates to inform fishway engineering, science, and practice. Ecological Engineering 58: 123-132.

Robinson, K.A., Hinch, S.G., Gale, M.K., Clark, T.D., Wilson, S.M., Donaldson, M.R., Farrell, A.P., Cooke, S.J., Patterson, D.A. 2013. Effects of post-capture ventilation assistance and elevated water temperature on sockeye salmon in a simulated capture-and-release experiment. Conservation Physiology DOI: 10.1093/conphys/cot015

Fisheries Research Cover Image

Murchie, K.J., S.J. Cooke, A.J. Danylchuk, S.E. Danylchuk, T.L. Goldberg, C.D. Suski and D.P. Philipp. 2013. Movement patterns of bonefish (Albula vulpes) in tidal creeks and coastal waters of Eleuthera, The Bahamas. Fisheries Research 147: 404-412.

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Cooke, S.J., J.D. Midwood, J.D. Thiem, A.P. Klimley, M.C. Lucas, E.B. Thorstad, J. Eiler, C. Holbrook, and B.C. Ebner. 2013. Tracking animals in freshwater with electronic tags: past, present and future. Animal Biotelemetry 1: 5.

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LeDain, M.R.K., S.M. Larocque, L.J. Stoot, N. Cairns, G. Blouin-Demers, and S.J. Cooke. 2013. Assisted recovery following prolonged submergence in fishing nets can be beneficial to turtles: an assessment with blood physiology and reflex impairment. Chelonian Conservation and Biology 12: 172-177.

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Steffensen, S.M., J.D. Thiem, K.M. Stamplecoskie, T.R. Binder, C. Hatry, N. Langlois-Anderson, and S.J. Cooke. 2013. Biological effectiveness of an inexpensive nature-like fishway for passage of warmwater fish in a small Ontario stream. Ecology of Freshwater Fish 22:374-383

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Thiem, J.D., T.R. Binder, P. Dumont, D. Hatin, C. Hatry, C. Katopodis, K.M. Stamplecoskie, and S.J. Cooke. 2013. Multi-species fish passage behaviour in a vertical slot fishway on the Richelieu River, Quebec, Canada. River research and Applications 29:582-592

Fisheries Research Cover Image

Walker, R.W., R.S. Brown, K.A. Deters, M.B. Eppard, and S.J. Cooke. 2013. Does UV disinfection compromise sutures? An evaluation of tissue response and suture retention in salmon surgically implanted with transmitters. Fisheries Research 147:32-35

Cooke, S.J., L. Sack, C.E. Franklin, A.P. Farrell, J. Beardall, M. Wikelski and S.L.Chown. 2013. What is conservation physiology? Perspectives on an increasingly integrated and essential science.  Conservation Physiology DOI:10.1093/conphys/cot001 (inaugural paper for this journal)

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Nagrodski, A., K.J. Murchie, K.M. Stamplecoskie, C.D. Suski, and S.J. Cooke. 2013.  Effects of an experimental short-term cortisol challenge on the behaviour of wild creek chub (Semotilus atromaculatus) in mesocosm and stream environments.  Journal of Fish Biology 82:1138-1158

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Arlinghaus, R., S.J. Cooke, and W. Potts. 2013. Towards resilient recreational fisheries on a global scale through improved understanding of fish and fisher behaviour. Fisheries Management and Ecology 20:91-98

Fisheries Management and Ecology Cover Image

Cooke, S.J., M.R. Donaldson, C.M. O’Connor, G.D. Raby, R. Arlinghaus, A.J. Danylchuk, K.C. Hanson, S.G. Hinch, T.D. Clark, D.A. Patterson, and C.D. Suski. 2013.  The physiological consequences of catch-and-release angling: perspectives on experimental design, interpretation, extrapolation, and relevance to stakeholders.  Fisheries Management and Ecology 20:268-287

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Thiem, J.D., D. Hatin, P. Dumont, G. Van Der Kraak, and S.J. Cooke. 2013.  Biology of lake sturgeon (Acipenser fulvescens) spawning below a dam on the Richelieu River, Quebec: behaviour, egg deposition and endocrinology.  Canadian Journal of Zoology 91:175-186

Transactions of the American Fisheries Society

Raby, G.D., S.J. Cooke, K.V. Cook, S.H. McConnachie, M.R. Donaldson, S.G. Hinch, C.K. Whitney, S.M. Drenner, D.A. Patterson, T.D. Clark, and A.P. Farrell. 2013. Resilience of pink salmon and chum salmon to simulated capture stress incurred upon arrival at spawning grounds. Transactions of the American Fisheries Society 142:524-539

Transactions of the American Fisheries Society

Collins, A.L., S.G. Hinch, D.W. Welch, S.J. Cooke, and T.D. Clark. 2013.  Intracoelomic acoustic tagging of juvenile sockeye salmon: swimming performance, survival, and post-surgical wound healing in freshwater and during a transition to seawater.  Transactions of the American Fisheries Society 142:515-523

canadian journal of fisheries and aquatic sciences cover Image

Donaldson, M.R., G.D. Raby, V.N. Nguyen, S.G. Hinch, D.A. Patterson, A.P. Farrell, M. Rudd, L.A. Thompson, C.M. O’Connor, A.H. Colotelo, S.H. McConnachie, K.V. Cook, D. Robichaud, K.K. English, and S.J. Cooke. 2013. Evaluation of a simple technique for recovering Pacific salmon from capture stress: integrating comparative physiology, biotelemetry, and social science to solve a conservation problem.  Canadian Journal of Fisheries and Aquatic Sciences 70:90-100

Journal of Experimental Marine Biology and Ecology Cover Image

Brownscombe, J.W., J.D. Thiem, C. Hatry, F. Cull, C.R. Haak, A.J. Danylchuk, and S.J. Cooke. 2013. Recovery bags reduce post-release impairments in locomotory activity and behaviour of bonefish (Albula spp.) following exposure to angling-related stressors. Journal of Experimental Marine Biology and Ecology 440:207-215

Journal of Experimental Zoology Cover Image

O’Connor, C.M., M. Nannini, D.H. Wahl, S.M. Wilson, K.M. Gilmour, and S.J. Cooke. 2013.  Sex-specific consequences of experimental cortisol elevation in pre-reproductive largemouth bass.  Journal of Experimental Zoology A 319:23-31

Hydrobiologia Cover Image

Nagrodski, A., C.D. Suski, and S.J. Cooke.  2013.  Health, condition, and survival of creek chub (Semotilus atromaculatus) across a gradient of stream habitat quality following an experimental cortisol challenge.  Hydrobiologia 702:283-296

Comparative Biochemistry and Physiology Cover Image

Wilson, S.M., S.G., Hinch, E.J. Eliason, A.P. Farrell, and S.J. Cooke. 2013.  Calibrating acoustic transmitters for estimating energy use by wild adult Pacific salmon.  Comparative Biochemistry and Physiology  164:491-498

environmental biology of fishes cover image

Gravel, M.-A., and S.J. Cooke. 2013.  Does nest predation pressure influence the energetic cost of nest guarding in a teleost fish?  Environmental Biology of Fishes 96:93-107

Transactions of the American Fisheries Society

Trushenski, J.T., J.D. Bowker, S.J. Cooke, D. Erdahl, T. Bell, J.R. MacMillan, R.P. Yanong, J.E. Hill, M.C. Fabrizio, J.E. Garvey, and S. Sharon. 2013.  Issues regarding the use of sedatives in fisheries and the need for immediate-release options.  Transactions of the American Fisheries Society 142:156-170

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Colotelo, A.H., G.D. Raby, C.T. Hasler, T.J. Haxton, K.E. Smokorowski, G. Blouin-Demers, and S.J. Cooke. 2013. Northern pike bycatch in an inland commercial hoop net fishery: effects of water temperature and net tending frequency on injury, physiology, and survival. Fisheries Research 137:41-49

2012

Fisheries Techniques

Cooke, S.J., S.G. Hinch, M.C. Lucas, and M. Lutcavage. 2012.  Chapter 18 – Biotelemetry and biologging. Pages 819-860 in A. V. Zale, D. L. Parrish, and T. M. Sutton, editors. Fisheries Techniques, Third Edition.  American Fisheries Society, Bethesda, Md.

Sutter, D.A.H., C.D. Suski, D.P. Philipp, T. Klefoth, D.H. Wahl, P. Kersten, S.J. Cooke, and R. Arlinghaus.  2013. Recreational fishing selectively captures individuals with the highest fitness potential.  Proceedings of the National Academy of Sciences USA 109:20960-20965

Environmental Reviews Cover Image

Taylor, M.K., and S.J. Cooke. 2012.  Meta-analyses of the effects of river flow on fish movement and activity.  Environmental Reviews 20:211-219

Reviews in Fish Biology and Fisheries Cover Image

Martins, E.G., S.G. Hinch, S.J. Cooke and D.A. Patterson. 2012.  Climate effects on growth, phenology, and survival of sockeye salmon (Oncorhynchus nerka): a synthesis of the current state of knowledge and future research directions.  Reviews in Fish Biology and Fisheries 22:887-914

Cooke, S.J., and N.W.R. Lapointe. 2012. Addressing editor(ial) malpractice in scientific journals. Ideas in Ecology and Evolution 5:84-92

Physiological and Biochemical Zoology

Donaldson, M.R., S.G. Hinch, G.D. Raby, D.A. Patterson, A.P. Farrell, and S.J. Cooke. 2012. Population- specific consequences of fisheries-related stressors on adult sockeye salmon. Physiological and Biochemical Zoology (focused issue on intraspecific variation in physiology and behavior) 85:729-739

Aquatic Biology Cover Image

Hasler, C.T., B. Mossop, D.A. Patterson, S.G. Hinch, and S.J. Cooke. 2012. Swimming activity of migrating Chinook salmon in a regulated river.  Aquatic Biology 17:47-56

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Pon, L.B., S.G. Hinch, C.D. Suski, D.A. Patterson, and S.J. Cooke. 2012.  The effectiveness of tissue biopsy as a means of assessing the physiological consequences of fishway passage.  River Research and Applications 28:1266-1274

FAO Technical Guidelines for Responsible Fisheries Cover Image

UN FAO.  Recreational fisheries. FAO Technical Guidelines for Responsible Fisheries. No. 13. Rome, FAO 2012. 176 pp. (Written under contract by R. Arlinghaus, S.J. Cooke and B. Johnson)

Murchie, K.J., A.J. Danylchuk, S.J. Cooke, A.C. O’Toole, A. Shultz, C. Haak, E. Brooks, and C.D. Suski. 2012 Considerations for tagging and tracking fish in tropical coastal habitats: lessons from bonefish, barracuda, and sharks tagged with acoustic transmitters.  American Fisheries Society Special Publication – Handbook of Fish Telemetry.  Bethesda, MD. pp. 389-412.

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Taylor, M.K., K. V. Cook, C. T. Hasler, D. C. Schmidt, and S. J. Cooke. 2012.  Behavioural and physiological responses of free-swimming mountain whitefish Prosopium williamsoni relative to short term changes in river flow.  Ecology of Freshwater Fish 21:609-616

north american journal of fisheries management cover image

Robert, J.J., S.M. Larocque, and S.J. Cooke. 2012.  Influence of hook size and style on short-term survival of deeply hooked bluegill.  North American Journal of Fisheries Management  32:869-874

Reviews in Fish Biology and Fisheries Cover Image

Molina, J.M., and S.J. Cooke. 2012. Trends in shark bycatch research: current status and research needs. Reviews in Fish Biology and Fisheries 22:719-737

Transactions of the American Fisheries Society

Binder, T.R., M.A. Nannini, D.H. Wahl, R. Arlinghaus, T. Klefoth, D.P. Philipp and S.J. Cooke. 2012. Largemouth bass, Micropterus salmoides, selected for differential vulnerability to angling exhibit similar routine locomotory activity in experimental ponds.  Transactions of the American Fisheries Society 141:1252-1259

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Nguyen, V.M., M. Rudd, S.J. Cooke and S.G. Hinch. 2012.  Differences in information use and preferences among recreational salmon anglers: implications for management initiatives to promote responsible fishing.  Human Dimensions of Wildlife 17:248-256

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Serafy, J.E., S.J. Cooke, G.A. Diaz, J. Graves, M. Hall, M. Shivji, and Y. Swimmer. 2012. Evaluating circle hooks in commercial, recreational and artisanal fisheries: research status and needs for improved conservation and management.  Bulletin of Marine Science 88:371-391

Bulletin of Marine Science Cover Image

Cooke, S.J., V.M. Nguyen, K.J. Murchie, A.J. Danylchuk and C.D. Suski. 2012.  Scientific and stakeholder perspectives on the use of circle hooks in recreational fisheries.  Bulletin of Marine Science  88:395-410

Journal of Fish Biology Cover Image

Johnson, J.E., D.A. Patterson, E.G. Martins, S.J. Cooke and S.G. Hinch. 2012. Quantitative methods for analyzing cumulative effects on fish migration success – a review.  Journal of Fish Biology 81:600-631 (Special issue on fish migration)

Journal of Fish Biology Cover Image

Hinch, S.G., S.J. Cooke, A.P. Farrell, K.M. Miller, M. Lapointe, and D.A. Patterson. 2012.  Dead fish swimming: early migration and premature mortality in adult Fraser River sockeye salmon.  Journal of Fish Biology 81:576-599 (Special issue on fish migration)

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Clark, T.D., M.R. Donaldson, S. Pieperhoff, S.M. Drenner, A. Lotto, S.J. Cooke, S.G. Hinch, D.A. Patterson, and A.P. Farrell. 2012.  Physiological benefits of being small in a changing world: responses of coho salmon (Oncorhynchus kisutch) to an acute thermal challenge and a simulated capture event.  PLoS One 7:e39079

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McConnachie, S.H., K.V. Cook, D.A. Patterson, K.M. Gilmour, S.G. Hinch, A.P. Farrell, and S.J. Cooke. 2012. Consequences of acute stress and cortisol manipulation on the physiology, behavior, and reproductive outcome of female Pacific salmon on spawning grounds.  Hormones and Behaviour 62:67-76

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Wilson, S.M., M-A. Gravel, T.A. Mackie, W.G. Willmore and S.J. Cooke. 2012.  Oxidative stress associated with paternal care in smallmouth bass (Micropterus dolomieu).  Comparative Biochemistry and Physiology A 162:212-218

Environmental Management Cover Image

Larocque, S.M., P. Watson, G. Blouin-Demers, and S.J. Cooke. 2012. Accidental bait: do deceased fish increase freshwater turtle bycatch in commercial fyke nets? Environmental Management 50:31-38

Diggles, B.K., S.J. Cooke, J.D. Rose, and W. Sawynok. 2012 . Response to Torgersen et al. (2011): Reply to Diggles et al. (2011): Ecology and welfare of aquatic animals in wild capture fisheries. Reviews in Fish Biology and Fisheries 22:367-369

Endangered Species Research Cover Image

Cooke, S.J., C. Paukert and Z. Hogan. 2012.  Endangered river fish: Factors hindering conservation and restoration. Endangered Species Research 17:179-191

Science of the total environment Cover Image

O’Toole, A., M.Y. Dechraoui Bottein, A.J. Danylchuk, J.S. Ramsdell and S.J. Cooke. 2012. Linking ciguatera poisoning to spatial ecology of fish: a novel approach to examining the distribution of biotoxin levels in the great barracuda by combining biotelemetry and non-lethal blood.  Science of the Total Environment 427-428:98-105

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McConnachie, S.H., C.M. O’Connor, K.M. Gilmour, G.K. Iwama, and S.J. Cooke. 2012.  Supraphysiological cortisol elevation alters the response of wild bluegill sunfish to subsequent stressors.  Journal of Experimental Zoology – Part A 317:321-332

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Nielsen, J.K., G.H. Niezgoda, S.J. Taggart, S.J. Cooke, P. Anson, C.T. Hasler, K.C. Hanson, and G. Carl. 2012. Mobile positioning of tagged aquatic animals using acoustic telemetry with a synthetic hydrophone array (SYNAPS: Synthetic Aperture Positioning System).  American Fisheries Society Symposium Proceedings 76:233-250.

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Cooke, S.J., and E.B. Thorstad. 2012.  Is radio telemetry getting washed downstream?  The changing role of radio telemetry in studies of freshwater ichthyofauna relative to other tagging and telemetry technology.  American Fisheries Society Symposium 76:349-369.

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Cooke, S.J., S.G. Hinch, M.R. Donaldson, T.D. Clark, E.J. Eliason, G.T. Crossin, G.D. Raby, K.M. Jeffries, M. Lapointe, K. Miller, D.A. Patterson, and A.P. Farrell. 2012.  Conservation physiology in practice: How physiological knowledge has improved our ability to sustainably manage Pacific salmon during up-river migration.  Philosophical Transactions of the Royal Society B 367:1757-1769 . (invited contribution)

Physiological and Biochemical Zoology

O’Connor, C.M., B.L. Barthel, K.M. Gilmour, D.P. Philipp, G. Van Der Kraak, and S.J. Cooke. 2012. Reproductive history and nest environment are correlated with circulating androgen and glucocorticoid concentrations in a parental care-providing teleost fish.  Physiological and Biochemical Zoology 85:209-218

Comparative Biochemistry and Physiology Cover Image

Brooks, E.J., J.W. Mandelman, K.A. Sloman, S. Liss, A.J. Danylchuk, S.J. Cooke, G.B. Skomal, D.P. Philipp, D.W. Sims, and C.D. Suski. 2012.  The physiological response of the Caribbean reef shark (Carcharhinus perezi) to longline capture.  Comparative Biochemistry and Physiology A 162:94-100

Journal of Environmental Management Cover Image

Nagrodski, A., G.D. Raby, C.T. Hasler, M.K. Taylor, and S.J. Cooke. 2012.  Fish stranding in freshwater systems: sources, consequences, and mitigation. Journal of Environmental Management 103:133-141

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Larocque, S., S.J. Cooke and G. Blouin-Demers. 2012.  A breath of fresh air: avoiding anoxia and mortality of freshwater turtles in fyke nets via the use of floats.  Aquatic Conservation 22:198-205

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Arlinghaus, R., T.D. Beard, Jr., S.J. Cooke, and I.G. Cowx. 2012.  Benefits and risks of adopting the code of practice for recreational fisheries.  Fisheries 37:165-172

Journal of Thermal Biology Cover Image

Hasler, C.T., S.J. Cooke, S.G. Hinch, E. Guimond, M.R. Donaldson, B. Mossop, and D.A. Patterson. 2012. Thermal biology and bioenergetics of different upriver migration strategies in a stock of summer-run Chinook salmon.  Journal of Thermal Biology (special issue on behavioural thermoregulation and telemetry) 37:265-272

Larocque, S.M., S.J. Cooke, and G. Blouin-Demers. 2012.  Mitigating bycatch of freshwater turtles in passively-fished fyke nets through the use of exclusion and escape modifications.  Fisheries Research 125-126:149-155

Rapp, T., J. Hallermann, S.J. Cooke, S.K. Hetz, S. Wuertz, and R. Arlinghaus. 2012. Physiological and behavioural consequences of capture and retention in carp sacks on common carp (Cyprinus carpio L.), with implications for catch-and-release recreational fishing.  Fisheries Research 125-126:57-68

Drenner, S.M., T.D. Clark, C.K. Whitney, E.G. Martins, S.J. Cooke, and S.G. Hinch. 2012. A synthesis of tagging studies examining the behaviour and survival of anadromous salmonids in marine environments. PLoS One 7:e31311

Larocque, S., A.H. Colotelo, S.J. Cooke, G. Blouin-Demers, T. Haxton, and K.E. Smokorowski. 2012.  Seasonal patterns in bycatch composition and mortality associated with a freshwater hoop net fishery. Animal Conservation 15:53-60.

Martins, E.G., S.G. Hinch, D.A. Patterson, M.J. Hague, S.J. Cooke, K.M. Miller, D.Robichaud, K.K. English and A.P. Farrell. 2012.  High river temperature reduces survival of sockeye salmon approaching spawning grounds and exacerbates female mortality.  Canadian Journal of Fisheries and Aquatic Sciences 69:330-342

Cook, K.V., C.M. O’Connor, S.H. McConnachie, K.M. Gilmour, and S.J. Cooke. 2012. Condition dependent intra-individual repeatability of stress-induced cortisol in a freshwater fish. Comparative Biochemistry and Physiology Part A 161:337-343

Flores, A.-M., J.M. Shrimpton, D.A. Patterson, J.A. Hills, S.J. Cooke, T. Yada, S. Moriyama, S.G. Hinch, and A.P. Farrell. 2012. Physiological and molecular endocrine changes in maturing wild sockeye salmon, Oncorhynchus nerka, during ocean and river migration. Journal of Comparative Physiology B 182:77-90

Jeffries, K.M., S.G. Hinch, E.G. Martins, T.D. Clark, A.G. Lotto, D.A. Patterson, S.J. Cooke, A.P. Farrell and K.M. Miller. 2012. Sex and proximity to reproductive maturity influence the survival, final maturation, and blood physiology of Pacific salmon exposed to high temperature during a simulated migration.  Physiological and Biochemical Zoology 85:62-73

Raby, G.D., M.R. Donaldson, S.G. Hinch, D.A. Patterson, A.G. Lotto, D. Robichaud, K.K. English, W.G. Willmore, A.P. Farrell, M.W. Davis, and S.J. Cooke. 2012. Validation of reflex indicators for measuring vitality and predicting the delayed mortality of wild coho salmon bycatch released from fishing gears. Journal of Applied Ecology 49:90-98

Stein, J.A., A.D. Schultz, S.J. Cooke, A.J. Danylchuk, K. Hayward and C.D. Suski. 2012.  The influence of hook size, type, and location on hook retention and survival of angled bonefish (Albula vulpes).  Fisheries Research 113:147-152

2011

Brooks, E.J., K.A. Sloman, S. Liss, L. Hassan-Hassanein, A.J. Danylchuk, S.J. Cooke, J.W. Mandelman, G.B. Skomal, D.W. Sims and C.D. Suski. 2011.  The stress physiology of extended duration tonic immobility in the juvenile lemon shark, Negaprion brevirostris (Poey 1868).  Journal of Experimental Marine Biology and Ecology 409:351-360

Vandergoot, C.S., K.J. Murchie, S.J. Cooke, J.M. Dettmers, R.A. Bergstedt, and D.G. Fielder. 2011. Evaluation of two forms of electroanesthesia and carbon dioxide for short-term anesthesia in walleye.  North American Journal of Fisheries Management 31:914-922

Cooke, S.J. 2011. On the basic-applied continuum in ecology and evolution and a call to action – perspectives of an early career researcher in academia. Ideas in Ecology and Evolution 4:37-39 (Invited editorial)

Cooke, S.J., S.J. Iverson, M.J.W. Stokesbury, S.G. Hinch, A.T. Fisk, D.L. VanderZwaag, R. Apostle, and F. Whoriskey. 2011.  Ocean Tracking Network Canada: A network approach to addressing critical issues in fisheries and resource management with implications for ocean governance.  Fisheries 36:583-592

Cook, K.V., S.H. McConnachie, K.M. Gilmour, S.G. Hinch and S.J. Cooke.  2011.  Fitness and behavioral correlates of pre-stress and stress-induced plasma cortisol titers in pink salmon (Oncorhynchus gorbuscha) upon arrival at spawning grounds. Hormones and Behaviour 60:489-497

Binder T.R., S.J. Cooke, and S.G. Hinch. 2011. The biology of fish migration. In: Farrell, A.P. (ed.), Encyclopedia of Fish Physiology: From Genome to Environment, volume 3, pp. 1921-1927. San Diego: Academic Press.

Cooke, S.J., G.T. Crossin, and S.G. Hinch. 2011. Pacific salmon migration: completing the cycle. In: Farrell, A.P. (ed.), Encyclopedia of Fish Physiology: From Genome to Environment, volume 3, pp. 1945-1952. San Diego: Academic Press.

Gale, M.K., S.G. Hinch, E.J. Eliason, S.J. Cooke, and D.A. Patterson. 2011. Physiological impairment of adult sockeye salmon in fresh water after simulated capture-and-release across a range of temperatures.  Fisheries Research 112:85-95

Cook, K.V., C.M. O’Connor, K.M. Gilmour, and S.J. Cooke. 2011. The glucocorticoid stress response is repeatable between years in a wild teleost fish.  Journal of Comparative Physiology Part A 60:489-497

Cooke, S.J., K.J. Murchie, and A.J. Danylchuk. 2011.  Sustainable “seafood” ecolabelling and initiatives in the context of inland fisheries: needs and opportunities to increase food security and protect freshwater ecosystems.  BioScience 61:911-918

Taylor, M.K., K.V. Cook, B. Lewis, D. Schmidt and S.J. Cooke. 2011.  Effects of intracoelomic radio transmitter implantation on mountain whitefish (Prosopium williamsoni).  Northwest Science 85:542-548

Hahn, L., A.A. Agostinho, K.K. English, J. Carosfeld, L. Fernando da Câmara, and S.J. Cooke. 2011.  Use of radiotelemetry to track threatened dorados Salminus brasiliensis in the upper Uruguay River, Brazil.  Endangered Species Research 15:103-114

Diggles, B.K., S.J. Cooke, J.D. Rose, and W Sawynok. 2011.  Ecology and welfare of aquatic animals in wild capture fisheries.  Reviews in Fish Biology and Fisheries 21:739-765

Cooke, S.J., C. Hatry, C.T. Hasler, and K.E. Smokorowksi.  2011.  Literature review, synthesis and proposed guidelines related to the biological evaluation of “fish friendly” very low head turbine technology in Canada.  Canadian Technical Report of Fisheries and Aquatic Sciences 2931.

Smokorowski, K.E., D. Boisclair, N. Bergeron, K. Clarke, S.J. Cooke, R. Cunjak, J. Dawson, B. Eaton, F. Hicks, P. Higgins, C. Katopodis, M. Lapointe, P. Legendre, M. Power, R. Randall, J. Rasmussen, G. Rose, A. Saint-Hilaire, B. Sellars, G. Swanson, N. Winfield, R. Wysocki, and D. Zhu. 2011.  NSERC’s HydroNet: A national research network to promote sustainable hydropower and healthy aquatic ecosystems.  Fisheries 36:480-488

Journal of Fish Biology Cover Image

Nannini, M.A., D.H. Wahl, S.J. Cooke, and D.P. Philipp. 2011.  The influence of selection for vulnerability to angling on foraging ecology in largemouth bass (Micropterus salmoides).  Journal of Fish Biology 79:1017-1028

Endangered Species Research Cover Image

Thiem, J.D., T.R. Binder, J.W. Dawson, P. Dumont, D. Hatin, C. Katopodis, D.Z. Zhu, and S.J. Cooke. 2011. Behaviour and passage success of upriver-migrating lake sturgeon (Acipenser fulvescens) in a vertical slot fishway on the Richelieu River, Quebec. Endangered Species Research 15:1-11

Clark, T.D., M.R. Donaldson, S.M. Drenner, S.G. Hinch, D.A. Patterson, J. Hills, V. Ives , J.J. Carter, S.J. Cooke, and A.P. Farrell. 2011.  The efficacy of field techniques for obtaining and storing blood samples from fish.  Journal of Fish Biology 79:1322-1333

Hatry, C., T.R. Binder, C.T. Hasler, K.D. Clarke, C. Katopodis, K.E. Smokorowski, and S.J. Cooke. 2011. Development of a national fish passage database for Canada (CanFishPass) : rationale, approach, utility, and potential applicability to other regions.  Canadian Water Resources Journal 36:219-228

Schäfer, R.B., S.J. Cooke, R. Arlinghaus, N. Bonada, F. Brischoux, A.F. Casper, J.A. Catford, and V. Rolland 2011. Early career researchers’ perspectives on the current and future state of the scientific publication process in ecology. Freshwater Biology 56:2405-2412

O’Toole, A.C., A.J. Danylchuk, T.L. Goldberg, C.D. Suski, D.P. Philipp, E. Brooks and S.J. Cooke. 2011. Spatial ecology and residency patterns of adult great barracuda (Sphyraena barracuda) in coastal waters of The Bahamas.  Marine Biology 158:2227-2237

Hasler, C.T., G.C. Christie, J. Imhof, M. Power, and S.J. Cooke. 2011.  A network approach to addressing strategic fisheries, aquaculture and aquatic sciences issues at a national scale: an introduction to a series of case studies from Canada.  Fisheries 36:450-453

Stokesbury, M.J.W., J.D. Neilson, E. Susko and S.J. Cooke.  2011.  Estimating mortality of Atlantic bluefin tuna (Thunnus thynnus) in an experimental recreational catch-and-release fishery.  Biological Conservation 144:2684-2691

Danylchuk, A.J., S.J. Cooke, T.L. Goldberg, C.D. Suski, K.J. Murchie, S.E. Danylchuk, A. Shultz, C.R. Haak, E. Brooks, A. Oronti, J.B. Koppelman, and D.P. Philipp. 2011. Aggregations and offshore movements as indicators of spawning activity of bonefish (Albula vulpes) in The Bahamas. Marine Biology 158:1981-1999

O’Connor, C.M., K.M. Gilmour, G. Van Der Kraak and S.J. Cooke. 2011.  Circulating androgens are influenced by parental nest defense in a wild teleost fish.  Journal of Comparative Physiology A 197:711-715

Danylchuk, A.J., S.J. Cooke, C.D. Suski, T.L. Goldberg, J.D. Petersen, and S.E. Danylchuk.2011. Involving recreational anglers in developing best handling practices for catch-and-release fishing of bonefish (Albula spp): a model for citizen science in an aquatic setting. American Fisheries Society Symposium 75:95-111

Landsman, S.J., H.J. Wachelka, C.D. Suski and S.J. Cooke. 2011.  Evaluation of the physiology, and survival of adult muskellunge (Esox masquinongy) captured and released by specialized anglers.  Fisheries Research 110:377-386

Donaldson, M.R., C.M. O’Connor, L.A. Thompson, A.J. Gingerich, S.E. Danylchuk, R.R. Duplain, and S.J. Cooke. Contrasting global game fish and non-game fish species. Fisheries 36:385-397

Landsman, S.J., V.M. Nguyen, L.F.G. Gutowsky, J. Gobin, K.V. Cook, T.R. Binder, N. Lower, R.L. McLaughlin, and S.J. Cooke. 2011.  Fish movement and migration studies in the Laurentian Great Lakes: research trends and knowledge gaps.  Journal of Great Lakes Research 37:365-379

Beard, T.D., R. Arlinghaus, D. Bartley, S.J. Cooke, S. de Silva, P. McIntyre and I.G. Cowx.  2011. Ecosystem approach to inland fisheries: research needs and implementation strategies.  Biology Letters 7:481-483

Hasler, C.T., A.H. Colotelo, T. Rapp, E. Jamieson, K. Bellehumeur, R. Arlinghaus, and S.J. Cooke. 2011. Opinions of fisheries researchers, managers, and anglers towards recreational fishing issues: an exploratory analysis for North America. American Fisheries Society Symposium 75: 51-74

Hasler, C.T., M.R. Donaldson, R.P.B. Sunder, E. Guimond, D.A. Patterson, B. Mossop, S.G. Hinch, and S.J. Cooke. 2011. Osmoregulatory, metabolic and nutritional condition of summer-run male Chinook salmon in relation to their fate and migratory behavior in a regulated river. Endangered Species Research 14:79-89

Wilson, A.D.M., T.R. Binder, K.P. McGrath, S.J. Cooke and J-G. J. Godin. 2011. Capture technique and fish personality: angling targets timid bluegill sunfish, Lepomis macrochirus.  Canadian Journal of Fisheries and Aquatic Sciences 68:749-757

Shultz, A.D., K.J. Murchie, C. Griffith, S.J. Cooke, A.J. Danylchuk, T.L. Goldberg and C.D. Suski. 2011. Impacts  of dissolved oxygen on the behavior and physiology of bonefish: implications for live-release angling tournaments.  Journal of Experimental Marine Biology and Ecology 402:19-26

Danylchuk, A.J., and S.J. Cooke. 2011. Engaging the recreational angling community to implement and manage aquatic protected areas.  Conservation Biology 25:458-464

Rudd, M.A., K.F. Beazley, S.J. Cooke, E. Fleishman, D.E. Lane, M.B. Mascia, R. Roth, G. Tabor, J.A. Bakker, T. Bellefontaine, D. Berteaux, B. Cantin, K.G. Chaulk, K. Cunningham, R. Dobell, E. Fast, N. Ferrara, C.S. Findlay, L.K. Hallstrom, T. Hammond, L. Hermanutz, J.A. Hutchings, K.E. Lindsay, T.J. Marta, V. Nguyen, G. Northey, K. Prior, S. Ramirez-Sanchez, J. Rice, D.J.H. Sleep, N.D. Szabo, G. Trottier, J.-P. Toussaint, J.P. Veilleux. 2011 . Generation of priority research questions to inform conservation policy and management at a national level. Conservation Biology 25:476-484

Gutowsky, L.F.G., P.M. Harrison, S.J. Landsman, M. Power, and S.J. Cooke. 2011.  Injury and mortality associated with recreational troll capture of bull trout (Salvelinus confluentus) in a reservoir in the Kootenay-Rocky Mountain region of British Columbia.  Fisheries Research 109:379-383

Colotelo, A.C., and S.J. Cooke. 2011. Evaluation of common angling-induced sources of epithelial for popular freshwater sport fish using fluorescein. Fisheries Research 109:217-224

Gravel, M-A., C.D. Suski and S.J. Cooke. 2011. Behavioral and physiological consequences of nest predation pressure for larval fish. Behavioural Ecology 22:510-519

O’Connor, C.M., K.M. Gilmour, R. Arlinghaus,  S. Matsumura, C.D. Suski, D.P. Philipp, and S.J. Cooke. 2011. Short-term cortisol elevation affects individual and population growth rates in wild largemouth bass (Micropterus salmoides).  Canadian Journal of Fisheries and Aquatic Sciences 68:693-705

Donaldson, M.R., D.D. Aday, and S.J. Cooke. 2011.  A call for ‘mini-reviews’: An effective but underutilized method of synthesizing knowledge to inform and direct fisheries management, policy and research.  Fisheries 36:123-129

Chomyshyn, L., S.H. McConnachie and S.J. Cooke. 2011. Evaluation of water entry into the coelom and different levels of aseptic technique during surgical implantation of electronic tags in freshwater fish. Reviews in Fish Biology and Fisheries 21:61-70

Thiem, J.D., M.K. Taylor, S.H. McConnachie, T.R. Binder and S.J. Cooke. 2011.  Trends in the reporting of tagging procedures for fish telemetry studies that have used surgical implantation of transmitters: a call for more complete reporting. Reviews in Fish Biology and Fisheries 21:117-126

Brown, R.S., M.B. Eppard, K.J. Murchie, J.L. Nielsen, and S.J. Cooke. 2011. An introduction to the practical and ethical perspectives on the need to advance and standardize the intracoelomic surgical implantation of electronic tags in fish. Reviews in Fish Biology and Fisheries 21:1-9

Cooke, S.J., G.N. Wagner, R.S. Brown and K.A. Deters. 2011.  Training considerations for the intracoelomic implantation of electronic tags in fish with a summary of common surgical errors.  Reviews in Fish Biology and Fisheries 21:11-24

Cooke, S.J., C. Woodley, M.B. Eppard, R.S. Brown and J.L. Nielsen. 2011.  Advancing the surgical implantation of electronic tags in fish: a gap analysis and research agenda based on a review of trends in intracoelomic tagging effects studies. Reviews in Fish Biology and Fisheries 21:127-151

Wagner, G.N., S.J. Cooke, R.S. Brown and K.A. Deters. 2011.  Surgical implantation techniques for electronic tags in fish.  Reviews in Fish Biology and Fisheries 21:71-81

Butcher, P.A., M.K. Broadhurst, K.C. Hall and S.J. Cooke. 2011.  Post-release survival and physiology of angled luderick (Girella tricuspidata) after confinement in keeper nets in an Australian estuary. ICES Journal of Marine Science 68:572-579

Donaldson, M.R., S.G. Hinch, D.A. Patterson, J. Hills, J.O. Thomas, S.J. Cooke, G.D. Raby, L.A. Thompson, D. Robichaud, K.K. English, and A.P. Farrell. 2011. The consequences of angling and beach seine capture on the physiology, post-release behaviour and survival of adult sockeye salmon during upriver migration. Fisheries Research 108:133-141

Miller, K.M., S. Li, K.H. Kaukinen, N. Ginther, E. Hammill,  J.M.R. Curtis, D.A. Patterson, T. Sierocinski, L. Donnison,  P. Pavlidis, S.G. Hinch, K.A. Hruska, S.J. Cooke, K.K. English, and A.P. Farrell.  2011.  Genomic signatures predict migration and spawning failure in wild Canadian salmon. Science 331:214-217

O’Connor, C.M., C.Y. Yick, K.M. Gilmour, G. Van Der Kraak, and S.J. Cooke. 2011. The glucocorticoid stress response is attenuated but unrelated to reproductive investment during parental care in a teleost fish. General and Comparative Endrocrinology 170:215-221

Murchie, K.J., S.J. Cooke, A.J. Danylchuk, S.E. Danylchuk, T.L. Goldberg, C.D. Suski, and D.P. Philipp. 2011 Thermal biology of bonefish (Albula vulpes) in Bahamian coastal waters and tidal creeks:  an integrated laboratory and field study.  Journal of Thermal Biology 36:38-48

La, V.T., and S.J. Cooke. 2011. Advancing the science and practice of fish kill investigations. Reviews in Fisheries Science 19:21-33

Martins, E.G., S.G. Hinch, D.A. Patterson, M.J. Hague, S.J. Cooke, K.M. Miller, M.F. Lapointe, K.K. English, and A.P. Farrell. 2011. Effects of river temperature and climate warming on stock-specific survival of adult migrating Fraser River sockeye salmon (Oncorhynchus nerka). Global Change Biology 17:99-114

Murchie, K.J., S.J. Cooke, A.J. Danylchuk, and C.D. Suski. 2011. Estimates of field activity and metabolic rates of bonefish (Albula vulpes) in coastal marine habitats using acoustic tri-axial accelerometer transmitters and intermittent-flow respirometry.  Journal of Experimental Marine Biology and Ecology 396:147-155

Roscoe, D.W., S.G. Hinch, S.J. Cooke, and D.A. Patterson. 2011.  Fishway passage and post-passage of up-river migrating sockeye salmon in the Seton River, British Columbia. River Research and Applications 27:693-705

2010

Cowx, I.G., R. Arlinghaus, and S.J. Cooke. 2010.  Harmonising recreational fisheries and conservation objectives for aquatic biodiversity in inland waters.  Journal of Fish Biology 76:2194-2215

Walker, R.P., A. O’Toole, Z. Whynot, K. C. Hanson, and S.J. Cooke. 2010.  Evaluation of the aquatic habitat and fish assemblage in an urban reach of the historic Rideau Canal, Ottawa, Canada: implications for management in an engineered system. Urban Ecosystems 13:563-582

O’Toole, A.C., K.J. Murchie, C. Pullen, K.C. Hanson, C.D. Suski, A.J. Danylchuk, and S.J. Cooke. 2010. Locomotory activity and depth distribution of adult great barracuda (Sphyraena barracuda) in Bahamian coastal habitats determined using acceleration and pressure biotelemetry transmitters.  Marine and Freshwater Research 61:1446-1456

Redpath, T.D., S.J. Cooke, C.D. Suski, R. Arlinghaus, P. Couture, D.H. Wahl, and D.P. Philipp. 2010. The metabolic and biochemical basis of vulnerability to recreational angling after three generations of angling-induced selection in a teleost fish. Canadian Journal of Fisheries and Aquatic Sciences 67:1983-1992

O’Connor, C.M., K.M. Gilmour, R. Arlinghaus, C.T. Hasler, D.P. Philipp, and S.J. Cooke. 2010. Seasonal carryover effects following the administration of cortisol to a wild teleost fish. Physiological and Biochemical Zoology 83:950-957

Donaldson, M.R., T.D. Clark, S.G. Hinch, S.J. Cooke, D.A. Patterson, M.K. Gale, P.B. Frappell, and A.P. Farrell. 2010. Physiological responses of free-swimming adult coho salmon to simulated predator and fisheries encounters. Physiological and Biochemical Zoology 83:973-983